PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB03G37700.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NF-YA
Protein Properties Length: 267aa    MW: 28749.9 Da    PI: 9.5936
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB03G37700.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA105.25.4e-33171227158
     CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                   +ep+YVNaKQy++Il+RRq+Rak+e e+kl  ksrkpylheSRh+hA+rR+Rg+gGrF
  OB03G37700.1 171 EEPVYVNAKQYHGILRRRQSRAKAELERKL-VKSRKPYLHESRHQHAMRRARGTGGRF 227
                   69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005217.1E-37169230IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115238.832170230IPR001289Nuclear transcription factor Y subunit A
PfamPF020452.5E-28172227IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006167.7E-25173195IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860175195IPR018362CCAAT-binding factor, conserved site
PRINTSPR006167.7E-25204227IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010262Biological Processsomatic embryogenesis
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0055046Biological Processmicrogametogenesis
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MESRPGGTNL AEPRAQGALP SGVPIQQPWW TTSAGIGAVS PAVVAPASGA GISLSSNPVG  60
GGGAQGRDGG DDATGESSED SRRSAEPKDG STSQEKHHAT SQMTALASDY LTPFSQLELN  120
QPIASAAYQY PDSYYMGMVG PYGPQAMSAQ THYQLPGLTH SRMPLPLEIS EEPVYVNAKQ  180
YHGILRRRQS RAKAELERKL VKSRKPYLHE SRHQHAMRRA RGTGGRFLNT KKNETGAPSE  240
KAEPNKGEQN TGHHRVPPDL QLLHKEA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A3e-21171235266NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB03G37700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2880300.0AB288030.1 Oryza sativa Japonica Group OsHAP2D mRNA for HAP2 subunit of HAP complex, complete cds.
GenBankAK0698540.0AK069854.1 Oryza sativa Japonica Group cDNA clone:J023036P10, full insert sequence.
GenBankEU8470120.0EU847012.1 Oryza sativa Japonica Group clone KCS256D08 CCAAT-binding transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006650437.20.0PREDICTED: nuclear transcription factor Y subunit A-4-like
TrEMBLJ3LRU40.0J3LRU4_ORYBR; Uncharacterized protein
STRINGOB03G37700.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82053649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20910.15e-42nuclear factor Y, subunit A9