PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB03G38380.1
Common NameLOC102707756
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 618aa    MW: 64954.9 Da    PI: 4.9471
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB03G38380.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS458.93.1e-1402366141374
          GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl...fsevsPilkfs 94 
                   lv++Ll+cAeav+++++++a+al++++ +la+++g +m+++aayf eALa+r++r        ++p +++     ++++a+ l   f+e +P+lkf+
  OB03G38380.1 236 LVHALLACAEAVQQENFAAAEALVKQIPTLAASQGGAMRKVAAYFGEALARRVYR--------FRPADST---LLDAAFADLLhahFYESCPYLKFA 321
                   689****************************************************........5565555...3333333333334*********** PP

          GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlel 191
                   h+taNqaIlea++g++rvH++Df+i+qG+QWpaLlqaLa Rp+gpps+R+Tgvg+p+++++++l+++g++La+fA++++v+f+++ lva +l+dle+
  OB03G38380.1 322 HFTANQAILEAFAGCRRVHVVDFGIKQGMQWPALLQALALRPGGPPSFRLTGVGPPQPDETDALQQVGWKLAQFAHNIRVDFQYRGLVAATLADLEP 418
                   ************************************************************************************************* PP

          GRAS 192 eeL......rvkp...gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak..... 274
                    +L      +       E++aVn+v++lhrll+++++le+    vL +v  ++P++++vveqea+hns+sFl+rf+e+l+yys++fdsle +     
  OB03G38380.1 419 FMLqpegeaD--AndePEVIAVNSVFELHRLLAQPGALEK----VLGTVHAVRPRIITVVEQEANHNSGSFLDRFTESLHYYSTMFDSLEGGssgqa 509
                   ***6555441..15569***********************....*********************************************88867777 PP

          GRAS 275 ..lpres..eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrp 366
                      p+++   +++++++++lgr+i+nvvacegaer+erhetl++Wr+rl++aGF+pv+l+++a+kqa++ll+ ++ +dgyrvee++g+l+lgW++rp
  OB03G38380.1 510 elSPPAAggGTDQVMSEVYLGRQICNVVACEGAERTERHETLGQWRNRLGRAGFEPVHLGSNAYKQASTLLALFAgGDGYRVEEKEGCLTLGWHTRP 606
                   7533333779*************************************************************************************** PP

          GRAS 367 LvsvSaWr 374
                   L+++SaWr
  OB03G38380.1 607 LIATSAWR 614
                   *******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF120411.1E-3438113IPR021914Transcriptional factor DELLA, N-terminal
SMARTSM011292.3E-3138119No hitNo description
PROSITE profilePS5098566.546210593IPR005202Transcription factor GRAS
PfamPF035141.1E-137236614IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006808Biological Processregulation of nitrogen utilization
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009863Biological Processsalicylic acid mediated signaling pathway
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0010187Biological Processnegative regulation of seed germination
GO:0010218Biological Processresponse to far red light
GO:0010233Biological Processphloem transport
GO:0042538Biological Processhyperosmotic salinity response
GO:2000033Biological Processregulation of seed dormancy process
GO:2000377Biological Processregulation of reactive oxygen species metabolic process
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 618 aa     Download sequence    Send to blast
MKREYQDAGG SGGGGGANMG SCKDKVMAGA AGEEEDVDEM LAALGYKVRS SDMADVAQKL  60
EQLEMAMGMG GVSAPGAADD GFVTHLATDT VHYNPSDLSS WVESMLSELN APPPPLPPAP  120
PAARLTSTSS TVTGGGFFEL QAAGDSSSST YALRPIPPPV VATADLSADS ARDSKRMRTG  180
GGSTSSSSSS SSSLGGGASR GSVVEAAPPA TQGTAAANAP AVPVVVVDTQ EAGIRLVHAL  240
LACAEAVQQE NFAAAEALVK QIPTLAASQG GAMRKVAAYF GEALARRVYR FRPADSTLLD  300
AAFADLLHAH FYESCPYLKF AHFTANQAIL EAFAGCRRVH VVDFGIKQGM QWPALLQALA  360
LRPGGPPSFR LTGVGPPQPD ETDALQQVGW KLAQFAHNIR VDFQYRGLVA ATLADLEPFM  420
LQPEGEADAN DEPEVIAVNS VFELHRLLAQ PGALEKVLGT VHAVRPRIIT VVEQEANHNS  480
GSFLDRFTES LHYYSTMFDS LEGGSSGQAE LSPPAAGGGT DQVMSEVYLG RQICNVVACE  540
GAERTERHET LGQWRNRLGR AGFEPVHLGS NAYKQASTLL ALFAGGDGYR VEEKEGCLTL  600
GWHTRPLIAT SAWRVAAA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A3e-5924361325377Protein SCARECROW
5b3h_D3e-5924361325377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway. In contrast, its overexpression prevents the GA signaling pathway and induces a dwarf phenotype. {ECO:0000250|UniProtKB:Q7G7J6}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB03G38380.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0309560.0AB030956.1 Oryza sativa Japonica Group mRNA for OsGAI, complete cds.
GenBankAB2629800.0AB262980.1 Oryza sativa Japonica Group SLR1 gene for DELLA protein, complete cds.
GenBankAC0877970.0AC087797.5 Oryza sativa chromosome 3 BAC OSJNBb0022E02 genomic sequence, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006650473.10.0PREDICTED: DELLA protein SLR1
SwissprotQ2TN880.0SLR1_ORYSI; DELLA protein SLR1
TrEMBLJ3LS120.0J3LS12_ORYBR; Uncharacterized protein
STRINGOB03G38380.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP99838138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.10.0RGA-like 1