PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB03G39890.1
Common NameLOC102702544
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 326aa    MW: 36222.7 Da    PI: 5.8319
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB03G39890.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.71.3e-10156204355
                   HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
           HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    +h+ +Er RR++i +++  L++l+P +    sk   Ka +L + ++Y++sLq
  OB03G39890.1 156 NSHSLAERLRRKKISERMKLLQDLVPGC----SKITGKAVMLDEIINYVQSLQ 204
                   58**************************....899*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.03E-16151220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.92E-11151208No hitNo description
PROSITE profilePS5088815.447153203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-16153221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.5E-8156204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.6E-10159209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MHSGQQSDQC PGPNSSKEFL GVNWDSIVMH QKMGYNSGPF GFQGYPLELE DREGLYRSPN  60
GAFCQNIQMS DDHSSGLKKR KGVDDCIRLL NTSASSRIQN VGDQPTEVSS QQERVSMEED  120
NQKSCSKMQS KEDSSDGDGT KEDYVHVRAK RGQATNSHSL AERLRRKKIS ERMKLLQDLV  180
PGCSKITGKA VMLDEIINYV QSLQRQVEFL SMKLATVNPE LSFDIEQILS KQMMLSQDRH  240
LAFYGVDPGS SALVAHFNQG IMQPEMMCNI SDPVDVLQGT TIHDISTVNQ IPAMWEGLQN  300
IPHMNFNPGA AADSSTNNAG SMKIEK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. Binds to chromatin DNA of the FT gene and promotes its expression, and thus triggers flowering in response to blue light (PubMed:24130508). {ECO:0000269|PubMed:23161888, ECO:0000269|PubMed:24130508}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00135DAPTransfer from AT1G10120Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB03G39890.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006650534.10.0PREDICTED: transcription factor bHLH74-like isoform X2
SwissprotQ6NKN92e-52BH074_ARATH; Transcription factor bHLH74
TrEMBLJ3LSG30.0J3LSG3_ORYBR; Uncharacterized protein
STRINGOB03G39890.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60333650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10120.11e-54bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]