PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB03G41840.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 402aa    MW: 42414.2 Da    PI: 5.8872
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB03G41840.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY91.27.9e-29207263259
                   --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
          WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                   +DgynWrKYGqK+ k++e prsYY+Ct  gCpvkk vers+ d+ + eitY+g+H h+
  OB03G41840.1 207 KDGYNWRKYGQKQLKDAESPRSYYKCTRDGCPVKKIVERSS-DGCIKEITYKGRHSHP 263
                   8****************************************.***************8 PP
2WRKY78.47.9e-25347390144
                   ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSS CS
          WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaed 44 
                   ldDgy+WrKYGqK+vkg++ prsYY+Ct  gC+v+k++er++ d
  OB03G41840.1 347 LDDGYRWRKYGQKVVKGNPRPRSYYKCTADGCNVRKQIERASAD 390
                   59***************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.9E-26201265IPR003657WRKY domain
PROSITE profilePS5081122.607201265IPR003657WRKY domain
SuperFamilySSF1182902.48E-23205265IPR003657WRKY domain
SMARTSM007749.8E-31206264IPR003657WRKY domain
PfamPF031064.0E-22207263IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.3E-26332391IPR003657WRKY domain
SuperFamilySSF1182903.66E-21339390IPR003657WRKY domain
PROSITE profilePS5081127.29342390IPR003657WRKY domain
SMARTSM007741.3E-20347397IPR003657WRKY domain
PfamPF031061.6E-18348389IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MTPYVILGEA LDLTSPSSAV SASDQALRRP AAEVAIASTT PERVFDGGGG VPGPVPVYGS  60
DFDQGASYMA LLAAGAGAVA PTPAAWAVDE EPPGISLPPQ FSMANYAPPS YQLPASLVSP  120
PPLAAGLHPY PPYLHGVDAP QQWPPRPTPS PSSSSLQPPP SFTVFTAGAP HEQHHSMQQL  180
LLRAAAFGGG MQAAAAPAAA TIEQPAKDGY NWRKYGQKQL KDAESPRSYY KCTRDGCPVK  240
KIVERSSDGC IKEITYKGRH SHPRPLDPRR GSSPPSGMAG DNAADGAGPS AEVDDDDPSD  300
DDMLHEDDGG GGEEGRDRGA DGVGEAGQRV VRKPKIILQT TSEVDLLDDG YRWRKYGQKV  360
VKGNPRPRSY YKCTADGCNV RKQIERASAD AWPSNPAAAL AR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A7e-25208390877Probable WRKY transcription factor 4
2lex_A7e-25208390877Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (PubMed:26025535). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:19199048, PubMed:26025535). Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (PubMed:15618416, PubMed:19199048, PubMed:26025535). {ECO:0000269|PubMed:15618416, ECO:0000269|PubMed:19199048, ECO:0000269|PubMed:26025535}.
UniProtTranscription repressor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (By similarity). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000250|UniProtKB:Q6QHD1}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB03G41840.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:15618416, PubMed:19199048). Slightly down-regulated by gibberellic acid (GA) (PubMed:15618416). Accumulates in response to jasmonic acid (MeJA) (By similarity). {ECO:0000250|UniProtKB:Q6B6R4, ECO:0000269|PubMed:15618416, ECO:0000269|PubMed:19199048}.
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:25110688). Slightly down-regulated by gibberellic acid (GA) (By similarity). Accumulates in response to jasmonic acid (MeJA) (PubMed:16919842). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000269|PubMed:16919842, ECO:0000269|PubMed:25110688}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0798871e-125AC079887.17 Oryza sativa (japonica cultivar-group) chromosome 3 BAC OSJNBa0040E01 genomic sequence, complete sequence.
GenBankAC0842821e-125AC084282.6 Oryza sativa chromosome 3 BAC OSJNBb0048A17 genomic sequence, complete sequence.
GenBankAP0149591e-125AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankAY3418481e-125AY341848.1 Oryza sativa (japonica cultivar-group) WRKY7 mRNA, complete cds.
GenBankAY3418521e-125AY341852.1 Oryza sativa (japonica cultivar-group) WRKY11 mRNA, complete cds.
GenBankCP0126111e-125CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015690074.10.0PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC102720317
SwissprotQ6B6R44e-58WRK24_ORYSI; WRKY transcription factor WRKY24
SwissprotQ6IEQ75e-58WRK24_ORYSJ; WRKY transcription factor WRKY24
TrEMBLJ3LT080.0J3LT08_ORYBR; Uncharacterized protein
STRINGOB03G41840.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28753236
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01080.12e-55WRKY DNA-binding protein 58
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zhang ZL, et al.
    A negative regulator encoded by a rice WRKY gene represses both abscisic acid and gibberellins signaling in aleurone cells.
    Plant Mol. Biol., 2009. 70(1-2): p. 139-51
    [PMID:19199048]
  3. Basu S,Roychoudhury A
    Expression profiling of abiotic stress-inducible genes in response to multiple stresses in rice (Oryza sativa L.) varieties with contrasting level of stress tolerance.
    Biomed Res Int, 2014. 2014: p. 706890
    [PMID:25110688]
  4. Zhang L, et al.
    Three WRKY transcription factors additively repress abscisic acid and gibberellin signaling in aleurone cells.
    Plant Sci., 2015. 236: p. 214-22
    [PMID:26025535]