PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB03G42170.1
Common NameLOC102709824
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 251aa    MW: 26348.6 Da    PI: 8.3998
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB03G42170.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.45.4e-0584106123
                   EEETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                   +kC+ CgksFs+   L  H  +H
  OB03G42170.1  84 FKCSVCGKSFSSYQALGGHKTSH 106
                   89**********99998888777 PP
2zf-C2H212.60.00041146168123
                   EEETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                   ++C++C+k F++   L  H r+H
  OB03G42170.1 146 HRCSICHKEFPTGQALGGHKRKH 168
                   79*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015712.71584111IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.8E-484107IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.72E-984106No hitNo description
SMARTSM003550.004684106IPR015880Zinc finger, C2H2-like
PfamPF139121.1E-1284107IPR007087Zinc finger, C2H2
PROSITE patternPS00028086106IPR007087Zinc finger, C2H2
SuperFamilySSF576673.72E-9141168No hitNo description
PfamPF139121.2E-12145170IPR007087Zinc finger, C2H2
SMARTSM003550.043146168IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.058146168IPR007087Zinc finger, C2H2
PROSITE patternPS000280148168IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006979Biological Processresponse to oxidative stress
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009611Biological Processresponse to wounding
GO:0009644Biological Processresponse to high light intensity
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0010117Biological Processphotoprotection
GO:0010200Biological Processresponse to chitin
GO:0015979Biological Processphotosynthesis
GO:0035264Biological Processmulticellular organism growth
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MSSASSMEAL HAAVLEEESA IVTSSSATSG EEGGHLPQGW AKRKRSRRQR SEEENLALCL  60
LMLSRGGHHR VQAPPPLSAA AAEFKCSVCG KSFSSYQALG GHKTSHRVKQ PAPAAPVVAV  120
LPPAEDREPA TSSTAASSDG ASGRVHRCSI CHKEFPTGQA LGGHKRKHYD GGIGSAAGAG  180
ASSTELLATV ATESEVGSSG NGHFAARAFD LNLPAVPEFV WRPCSKGKKM WDEEEEVQSP  240
LAFKKPRLLT A
Functional Description ? help Back to Top
Source Description
UniProtPotential transcription factor which binds the nonamer motif 5'-CATCCAACG-3'. Possibly involved in regulating transcription of the histone H3 and H4 genes. {ECO:0000269|PubMed:8223628}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00162DAPTransfer from AT1G27730Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB03G42170.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0907131e-149AC090713.6 Oryza sativa chromosome 3 BAC OSJNBa0002J24 genomic sequence, complete sequence.
GenBankAF3328761e-149AF332876.1 Oryza sativa zinc finger transcription factor ZF1 mRNA, complete cds.
GenBankAP0149591e-149AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCP0126111e-149CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006650639.10.0PREDICTED: zinc finger protein 1-like
SwissprotQ424301e-111ZFP1_WHEAT; Zinc finger protein 1
TrEMBLJ3LT410.0J3LT41_ORYBR; Uncharacterized protein
STRINGOB03G42170.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP102236113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27730.16e-34salt tolerance zinc finger