PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB03G42180.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 243aa    MW: 26583.6 Da    PI: 9.3116
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB03G42180.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.71.2e-092022421055
                   HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
           HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   rrRR+riN ++  L++l+P+      +K++ +++Le+A +Y+k Lq
  OB03G42180.1 202 RRRRERINVRLRILQKLVPNG-----TKVDISTMLEEAAHYVKFLQ 242
                   9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.176192241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.23E-10193242IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-9196242IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.0E-5198243IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.7E-7202242IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.15E-5208242No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MQWTPAPEEE ESEIAAQFFT ARYPCQNDRL EHREQDELGG MGARSSSVQW QPDRGTCYWP  60
PLSGGGSGTG GGSYHVGGCC YYAGEPDVSL GVNTIPGETG GAGVRRNVAP RLKRKTRPGH  120
GGDLGRRKKK ARASDTVRKQ REKWEQNCEK NQENMQCTSC ADSESNCSRG NCGTVDHVAG  180
GGNGKAPARR GSATGAQSLY ARRRRERINV RLRILQKLVP NGTKVDISTM LEEAAHYVKF  240
LQL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1112129KRKTRPGHGGDLGRRKKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB03G42180.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015690678.11e-147PREDICTED: transcription factor UNE10-like
TrEMBLJ3LT421e-180J3LT42_ORYBR; Uncharacterized protein
STRINGOB03G42180.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP144452123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33880.12e-21ROOT HAIR DEFECTIVE 6-LIKE 2