PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB03G42360.1
Common NameLOC102712516
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family G2-like
Protein Properties Length: 375aa    MW: 38934.8 Da    PI: 6.7586
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB03G42360.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.84.5e-32114167255
       G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                   pr+rWt+ LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  OB03G42360.1 114 PRMRWTTALHARFVHAVELLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRT 167
                   9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.99E-16111168IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-28112168IPR009057Homeodomain-like
TIGRFAMsTIGR015571.3E-23114167IPR006447Myb domain, plants
PfamPF002495.8E-8115166IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0080060Biological Processintegument development
GO:0005618Cellular Componentcell wall
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MLQRNLPNLS LRISPPAVSS AAASSEVSTA EKHLPTGSNA VTDAEGRGEV GFFGNPSSGT  60
AEPPGLSLGL GTTAHEDAAA GRHGDRLQPQ GCPFKRAATP RASLPGSKRS VRAPRMRWTT  120
ALHARFVHAV ELLGGHERAT PKSVLELMNV KDLTLAHVKS HLQMYRTVKS TDRSSHIAAG  180
EAQLLQQQAG MEVEAGAGGG GGGGGGDGGV VLPMMPACDD MVGICSSPAA ATSSAAAYFL  240
CATTSSAATA PPAVVPSLPA PTIPPRRTDH APVLEKGVAI VDSLHRCQKH NYSPVLQDAL  300
QGAEEDHHLI GSLPSIEAMA ATNSSSSPAS SSPSLASLEQ LLPEHHSFAP NLEISLGRQD  360
WNMDDHPQEL SLKYL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A2e-16115169458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B2e-16115169458Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A1e-16115169357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B1e-16115169357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C1e-16115169357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D1e-16115169357Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A2e-16115169458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C2e-16115169458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D2e-16115169458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F2e-16115169458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H2e-16115169458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J2e-16115169458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00107PBMTransfer from AT5G42630Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB03G42360.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1084080.0AK108408.1 Oryza sativa Japonica Group cDNA clone:002-142-G11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006650649.10.0PREDICTED: probable transcription factor RL9
TrEMBLJ3LT600.0J3LT60_ORYBR; Uncharacterized protein
STRINGOB03G42360.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP65543750
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42630.24e-41G2-like family protein