PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB03G45440.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 220aa    MW: 24189 Da    PI: 8.5258
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB03G45440.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.21.2e-073792354
                  HHHHHHHHHHHHHHHHHHHHHHCTSCC.C......TTS-STCHHHHHHHHHHHHHH CS
           HLH  3 rahnerErrRRdriNsafeeLrellPk.as...kapskKlsKaeiLekAveYIksL 54
                  r+h e+E+rRR+ri+s +++Lr +l   a+          +Ka+ L kAve +++L
  OB03G45440.1 37 RNHREAEKRRRERIKSHLDRLRAVLAVlAFlrfELLLMEIDKASLLAKAVERVRDL 92
                  78************************977799988888999*********999888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.8333492IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.09E-83796IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.9E-53792IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-83895IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MIPVEVEAAG AGRRMQGEAV VPMMLPPFFM GALAASRNHR EAEKRRRERI KSHLDRLRAV  60
LAVLAFLRFE LLLMEIDKAS LLAKAVERVR DLKQRMAGIG EAAPAHLFPT EHDEIVVLCD  120
DRSDLLPELI ETLRALRLRT LRAEMATLGG RVRNVLVLAR DASAGADDDD STADYSAGST  180
DGGDFLKEAL RALVERPGVA AGDRPKRRRV VSDMNMQAAA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1205209KRRRV
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB03G45440.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126111e-108CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015690123.11e-109PREDICTED: transcription factor bHLH106-like
TrEMBLJ3LU181e-151J3LU18_ORYBR; Uncharacterized protein
STRINGOB03G45440.11e-152(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP95783039
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41130.11e-11bHLH family protein