PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB03G45650.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 171aa    MW: 17950.5 Da    PI: 10.5244
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB03G45650.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2292.7e-091964254
           AP2  2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkle 54
                  +++GVr+++  g        +  +g  r+r +lg+f+taeeAa+a+ aa  +l+
  OB03G45650.1 19 RFRGVRQRP-GGG-------VGAGGrARRRLWLGTFDTAEEAAAAYNAASIRLR 64
                  589999999.555.......32234556********************988875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.35E-101973IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.9E-141974IPR001471AP2/ERF domain
SMARTSM003803.5E-121980IPR001471AP2/ERF domain
PfamPF008471.2E-51963IPR001471AP2/ERF domain
PROSITE profilePS5103215.1721974IPR001471AP2/ERF domain
PRINTSPR003672.0E-72031IPR001471AP2/ERF domain
PRINTSPR003672.0E-73955IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MEAGRIGEAA ASGTRPAARF RGVRQRPGGG VGAGGRARRR LWLGTFDTAE EAAAAYNAAS  60
IRLRCSSNTT TNFCSVRCYS PPELAKPTIQ SSEAVRPITL PIGPAKPTLL PQVKEEGASC  120
GGRVKEEGSS CEVQAPMWTM ISGKRKKRSG CGTRVRAFHA VSACLEEVGG A
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB03G45650.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1330071e-113AC133007.4 Oryza sativa chromosome 3 BAC OSJNBa0094J08 genomic sequence, complete sequence.
GenBankAC1391721e-113AC139172.2 Oryza sativa chromosome 3 BAC OSJNBb0042K11 genomic sequence, complete sequence.
GenBankAK0682521e-113AK068252.1 Oryza sativa Japonica Group cDNA clone:J013145D23, full insert sequence.
GenBankAP0149591e-113AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCU4062131e-113CU406213.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C108D05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006651952.11e-118PREDICTED: ethylene-responsive transcription factor RAP2-12-like
TrEMBLJ3LU391e-118J3LU39_ORYBR; Uncharacterized protein
STRINGOB03G45650.11e-119(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115732835