PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB03G46010.1
Common NameLOC102710192
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 164aa    MW: 18014.2 Da    PI: 8.2685
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB03G46010.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.90.000325072123
                  EEETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                  ++C+ Cg+ F++   L  H  +H
  OB03G46010.1 50 FVCKTCGRAFPSFQALGGHRTSH 72
                  89**********99998888777 PP
2zf-C2H212.60.00041103125123
                   EEETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                   ++C++Cg  F     L  H+r+H
  OB03G46010.1 103 HECHICGLGFEMGQALGGHMRRH 125
                   79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.19E-64676No hitNo description
PROSITE profilePS5015710.5965077IPR007087Zinc finger, C2H2
SMARTSM003550.185072IPR015880Zinc finger, C2H2-like
PfamPF139121.0E-105074IPR007087Zinc finger, C2H2
PROSITE patternPS0002805272IPR007087Zinc finger, C2H2
SuperFamilySSF576671.37E-5100128No hitNo description
SMARTSM003550.49103125IPR015880Zinc finger, C2H2-like
PfamPF139128.0E-11103128IPR007087Zinc finger, C2H2
PROSITE profilePS501579.827103130IPR007087Zinc finger, C2H2
PROSITE patternPS000280105125IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0045926Biological Processnegative regulation of growth
GO:0080134Biological Processregulation of response to stress
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
MKHPRQHDDE VSLALALSTD SSSDSSAAPG RKRKARRRSH VVPTSGEGEF VCKTCGRAFP  60
SFQALGGHRT SHLRGRTNGL ELGAVGDRAI RQHRAEKEHR EKHECHICGL GFEMGQALGG  120
HMRRHREEMA AGGIGSSADD WVWRCDARPE EVAAETPVLL ELFA
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in oxidative stress response. {ECO:0000269|PubMed:14722088}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00041PBMTransfer from AT3G46090Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB03G46010.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By H(2)O(2), heat stress, wounding and cucumber mosaic virus (CMV). {ECO:0000269|PubMed:14722088, ECO:0000269|PubMed:18922600}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1044331e-134AC104433.8 Oryza sativa chromosome 3 BAC OJ1754_E06 genomic sequence, complete sequence.
GenBankAK0688611e-134AK068861.1 Oryza sativa Japonica Group cDNA clone:J013170H07, full insert sequence.
GenBankAP0149591e-134AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankAY2864741e-134AY286474.1 Oryza sativa (japonica cultivar-group) zinc finger protein ZFP182 mRNA, complete cds.
GenBankCP0126111e-134CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
GenBankCT8293161e-134CT829316.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI011O15, full insert sequence.
GenBankCT8293171e-134CT829317.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI016A02, full insert sequence.
GenBankCT8293181e-134CT829318.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI021E01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006650804.11e-117PREDICTED: zinc finger protein ZAT8-like
SwissprotQ424534e-19ZAT7_ARATH; Zinc finger protein ZAT7
TrEMBLJ3LU751e-115J3LU75_ORYBR; Uncharacterized protein
STRINGOB03G46010.11e-116(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130530117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46090.13e-18C2H2 family protein