PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB03G46020.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 134aa    MW: 14163.5 Da    PI: 10.0639
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB03G46020.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.78.6e-0594116123
                   EEETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                   ++C++Cg+ F     L  H+r+H
  OB03G46020.1  94 HECHICGQGFEMGQALGGHMRRH 116
                   79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139121.9E-54764IPR007087Zinc finger, C2H2
PfamPF139125.3E-1193119IPR007087Zinc finger, C2H2
SuperFamilySSF576672.31E-693120No hitNo description
PROSITE profilePS5015710.59694121IPR007087Zinc finger, C2H2
PROSITE patternPS00028096116IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 134 aa     Download sequence    Send to blast
MTKHPRDGGV SLSLSLSLGA AAAAAAEAAK KXXXXXXXXX XXXXXXRAFP SFQALGGHRT  60
SHLRGRHGLA LCLAAATVKE APKKAEEKPA AATHECHICG QGFEMGQALG GHMRRHRDEA  120
AAVQAPPVLL ELFV
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB03G46020.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1044336e-98AC104433.8 Oryza sativa chromosome 3 BAC OJ1754_E06 genomic sequence, complete sequence.
GenBankAK1196906e-98AK119690.1 Oryza sativa Japonica Group cDNA clone:002-157-B05, full insert sequence.
GenBankAP0149596e-98AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankAY2864736e-98AY286473.1 Oryza sativa (japonica cultivar-group) zinc finger protein ZFP15 mRNA, complete cds.
GenBankAY3058646e-98AY305864.1 Oryza sativa (japonica cultivar-group) C2H2 type zinc finger transcription factor ZFP37 (ZFP37) mRNA, complete cds.
GenBankCP0126116e-98CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
GenBankCT8331406e-98CT833140.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA212G11, full insert sequence.
GenBankEU2808996e-98EU280899.1 Oryza sativa Indica Group zinc finger protein (MM874) gene, complete cds; mitochondrial.
GenBankEU2809006e-98EU280900.1 Oryza sativa Japonica Group zinc finger protein (MM874-2) gene, complete cds.
GenBankHQ8588466e-98HQ858846.1 Oryza sativa Japonica Group isolate UT1603 C2H2 transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006651964.11e-57PREDICTED: zinc finger protein ZAT12-like
TrEMBLJ3LU766e-75J3LU76_ORYBR; Uncharacterized protein
STRINGOB03G46020.19e-76(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130530117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46090.12e-13C2H2 family protein