PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB03G46690.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 200aa    MW: 21293.7 Da    PI: 4.0331
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB03G46690.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM45.32.8e-14894280
           NAM  2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.....kvkaeekewyfFskrdkkya...tgkrknratks 80
                   pG++F+P+d  l++ +L++k++++++e+ ++++++d+y+++P +L  +      +++++  wyfF++ + +++   +g r++ra++ 
  OB03G46690.1  8 DPGCHFRPSDGGLITLFLRPKIAEEPFEE-RIVNNADVYSSDPVELVgQhtpapGTQGNTGVWYFFCPPRYTSKhasSGGRRQRAVAG 94
                  69************************999.89**************7435665544445559*****976555422367788887654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.29E-17595IPR003441NAC domain
PROSITE profilePS5100513.4397172IPR003441NAC domain
PfamPF023653.6E-7985IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MADGIALDPG CHFRPSDGGL ITLFLRPKIA EEPFEERIVN NADVYSSDPV ELVGQHTPAP  60
GTQGNTGVWY FFCPPRYTSK HASSGGRRQR AVAGGGSEDE VPPPLDSLDF DLEALLSSPV  120
DENLTRQFST VTDEQCMRYL LDDEPLPCTA PTTMEVAGAG GGDNALIQTT RGACMDSEFI  180
ALLAAGHTVD ELLGPADPIS
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB03G46690.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLJ3LUE31e-144J3LUE3_ORYBR; Uncharacterized protein
STRINGOB03G46690.11e-145(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43632158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.23e-08NAC domain containing protein 47