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Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
OB03G46840.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
| Family |
GATA |
| Protein Properties |
Length: 203aa MW: 21490.7 Da PI: 7.6457 |
| Description |
GATA family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| OB03G46840.1 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GATA | 29.9 | 7.5e-10 | 26 | 45 | 1 | 20 |
GATA 1 CsnCgttkTplWRrgpdgnk 20
C+ C+ttkTplWR gp+g+k
OB03G46840.1 26 CTDCHTTKTPLWRGGPSGPK 45
******************98 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0008270 | Molecular Function | zinc ion binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 203 aa
Download sequence Send
to blast |
MDSSVEKGSE SIDPGERTAS GEPKACTDCH TTKTPLWRGG PSGPKVRSDP LLPLRFSICA 60
FSPALSVADP SDLFFFSFDP VAVQRLRDPV PEEEAGGAGA GRRRGRRGAA GEEEVQEGEG 120
GGGDRGPPHG RVRQGGGAEA AAADAAEETP RGGGESGHPP HGPLLRRHLR LSHHLPTRSN 180
SKREKESKKP RRKGSFDMGA MEE
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AC133339 | 0.0 | AC133339.3 Oryza sativa chromosome 3 BAC OSJNBa0078D06 genomic sequence, complete sequence. |
| GenBank | AC133778 | 0.0 | AC133778.4 Oryza sativa chromosome 3 BAC OSJNBb0027B08 genomic sequence, complete sequence. |
| GenBank | AK064036 | 0.0 | AK064036.1 Oryza sativa Japonica Group cDNA clone:001-125-C08, full insert sequence. |
| GenBank | AP014959 | 0.0 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. |
| GenBank | CP012611 | 0.0 | CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence. |
