PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB03G46930.1
Common NameLOC107303819
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 199aa    MW: 21335.6 Da    PI: 4.2759
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB03G46930.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM36.21.9e-11101417123
           NAM   7 FhPtdeelvveyLkkkvegkk.....leleevikevdiykvePwdLpk.......kvkaeekewyfFskrdkkyatgkrknratk.....sgyWkat 86 
                   F+P de+l + yL+  + +++       ++++++ +d+y++ P +L +       + +++ + wy Fs+ +   ++g rk r++      +  W+a 
  OB03G46930.1  10 FSPDDEQLTDSYLQSYLVRSSlsdlpPVVSSFFHVADVYSAPPDELLAgldpapgTGDGDGRVWYLFSPVRVLGSRGARKARTVVgagggNECWHAE 106
                   9**************998888667643444568999**********7446776655555778********************63334332446**** PP

           NAM  87 gkdkevlskkgelvglkktLvfykgrapkgektdWvm 123
                   g  +++ +  + + g  + + +  ++a+  +k  W+m
  OB03G46930.1 107 GGPRDIEK--SGAGGKLQKFSYKIKTASGVVKPGWLM 141
                   ******98..455677788888888888888999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100514.7174177IPR003441NAC domain
PfamPF023652.1E-69141IPR003441NAC domain
SuperFamilySSF1019414.97E-1710142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MDGFGSRLVF SPDDEQLTDS YLQSYLVRSS LSDLPPVVSS FFHVADVYSA PPDELLAGLD  60
PAPGTGDGDG RVWYLFSPVR VLGSRGARKA RTVVGAGGGN ECWHAEGGPR DIEKSGAGGK  120
LQKFSYKIKT ASGVVKPGWL MVLALGDQEH EGDGEFDERA DPESWEWENY LSAVLNETCK  180
QETLATAAAG QPPEETAVL
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB03G46930.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015690139.11e-144PREDICTED: uncharacterized protein LOC107303819
TrEMBLJ3LUG71e-143J3LUG7_ORYBR; Uncharacterized protein
STRINGOB03G46930.11e-143(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62801545