PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB03G48550.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 119aa    MW: 13130.1 Da    PI: 6.605
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB03G48550.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.51.5e-08348345
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                     +W+  + +++ +a + + g+   +W+++a+ +g g+t+ +++ ++ 
     OB03G48550.1  3 AWSDSDNQRFERALATYDGDtpgRWELVAAAVGGGKTADDVRRHYE 48
                     7*******************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007173.0E-4153IPR001005SANT/Myb domain
PROSITE profilePS512939.976155IPR017884SANT domain
SuperFamilySSF466891.04E-9353IPR009057Homeodomain-like
PfamPF002491.0E-6349IPR001005SANT/Myb domain
CDDcd001674.71E-6350No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 119 aa     Download sequence    Send to blast
MAAWSDSDNQ RFERALATYD GDTPGRWELV AAAVGGGKTA DDVRRHYERL EADLHRPPGR  60
GELVAAAVGG GKTADDVRRH YERLEADLHR IESESGPHRH HDDATQSNGH HTNNTGKRA
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB03G48550.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLJ3LUX93e-80J3LUX9_ORYBR; Uncharacterized protein
STRINGOB03G48550.15e-81(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27038230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.22e-16RAD-like 6