PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB04G11060.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 266aa    MW: 30065 Da    PI: 10.7402
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB04G11060.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS130.81.6e-4021196139320
          GRAS 139 ppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvksls 235
                   p    iT vg+    s++el++tg rLa++A++lg+ fef++ +++rled++l++L+vk+g ++ Vn+vl +hrll+++ +++    ++L l  s+ 
  OB04G11060.1  21 PEWATITRVGE----SRQELQKTGARLARIATALGMAFEFHA-MVDRLEDFRLWMLHVKRGKCVTVNCVLTMHRLLRDDSDVAL--ADFLGLAHSTG 110
                   44567999999....9**************************.8********************************88888877..99********* PP

          GRAS 236 Pkvvvvveqeadh.nsesFlerflealeyysalfdsl.eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerle 320
                     ++ + e+e    ns+++ ++f++al yy+a fd++ +a+l   s +r+kvE++ ++ ei+n+va eg+er+e he+ + W +r++
  OB04G11060.1 111 TAILLLGEHEGGSlNSGRWEAHFVHALWYYVATFDAVdAAGLLDVSPARAKVEEM-FALEIRNAVAFEGTERFELHESSAGWWRRVQ 196
                   **********8877***********************88999999**********.**************************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098518.5331230IPR005202Transcription factor GRAS
PfamPF035145.4E-3821196IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MAIKDRFSGN PEGLTRTNHK PEWATITRVG ESRQELQKTG ARLARIATAL GMAFEFHAMV  60
DRLEDFRLWM LHVKRGKCVT VNCVLTMHRL LRDDSDVALA DFLGLAHSTG TAILLLGEHE  120
GGSLNSGRWE AHFVHALWYY VATFDAVDAA GLLDVSPARA KVEEMFALEI RNAVAFEGTE  180
RFELHESSAG WWRRVQEHRH RRPGGDAGPH DREDVRRPRQ VQRAGAGRWR GAHAPVAGPA  240
ALHRGDVDIG QRRRQRRRQH RVGVHH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A8e-1215191133314GRAS family transcription factor containing protein, expressed
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1250256QRRRQRR
2252257RRQRRR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as positivie regulator of brassinosteroid (BR) signaling (PubMed:19220793, PubMed:22685166). Functions downstream of BRI1 and GSK2 to modulate BR responses. Acts as a direct target of GSK2 kinase to mediate BR responses (PubMed:22685166). Involved in feedback inhibition of BR biosynthetic genes. Repressed by BZR1 (PubMed:19220793). {ECO:0000269|PubMed:19220793, ECO:0000269|PubMed:22685166}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB04G11060.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by 24-epibrassinolide. {ECO:0000269|PubMed:19220793}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025812393.19e-72protein DWARF AND LOW-TILLERING
SwissprotQ9LWU91e-67DLT_ORYSJ; Protein DWARF AND LOW-TILLERING
TrEMBLJ3LVD10.0J3LVD1_ORYBR; Uncharacterized protein
STRINGOB04G11060.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP64043455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63100.17e-42GRAS family protein
Publications ? help Back to Top
  1. Tong H,Chu C
    Roles of DLT in fine modulation on brassinosteroid response in rice.
    Plant Signal Behav, 2009. 4(5): p. 438-9
    [PMID:19816111]
  2. Li W, et al.
    Identification and characterization of dwarf 62, a loss-of-function mutation in DLT/OsGRAS-32 affecting gibberellin metabolism in rice.
    Planta, 2010. 232(6): p. 1383-96
    [PMID:20830595]
  3. Tong H, et al.
    DWARF AND LOW-TILLERING acts as a direct downstream target of a GSK3/SHAGGY-like kinase to mediate brassinosteroid responses in rice.
    Plant Cell, 2012. 24(6): p. 2562-77
    [PMID:22685166]
  4. Zhang C,Bai MY,Chong K
    Brassinosteroid-mediated regulation of agronomic traits in rice.
    Plant Cell Rep., 2014. 33(5): p. 683-96
    [PMID:24667992]
  5. Yang C,Shen W,He Y,Tian Z,Li J
    OVATE Family Protein 8 Positively Mediates Brassinosteroid Signaling through Interacting with the GSK3-like Kinase in Rice.
    PLoS Genet., 2016. 12(6): p. e1006118
    [PMID:27332964]