PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB04G12040.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 86aa    MW: 9802.2 Da    PI: 11.7933
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB04G12040.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.13.5e-063052123
                  EEETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                  y+C++C + F++   L  H+++H
  OB04G12040.1 30 YTCGYCRREFRSAQALGGHMNVH 52
                  9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.89E-72857No hitNo description
PROSITE profilePS5015711.513057IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.608.9E-43056IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.4E-63054IPR007087Zinc finger, C2H2
PROSITE patternPS0002803252IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 86 aa     Download sequence    Send to blast
EQQQQRPWSC SFGMAAGLIS WPPQRSSSSY TCGYCRREFR SAQALGGHMN VHRRERARLR  60
QCPKRGPRQC PTPTPPPHPP PPPRLP
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may regulate cell division and growth. {ECO:0000269|Ref.4}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB04G12040.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL6630135e-51AL663013.4 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0089K06, complete sequence.
GenBankAP0149605e-51AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBankCP0126125e-51CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025880331.15e-21transcriptional regulator SUPERMAN
SwissprotQ9SLB81e-18ZFP11_ARATH; Zinc finger protein 11
TrEMBLJ3LVM97e-54J3LVM9_ORYBR; Uncharacterized protein
STRINGOB04G12040.11e-54(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP46673065
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42410.12e-21zinc finger protein 11