PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB04G15330.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 186aa    MW: 20307.6 Da    PI: 10.3727
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB04G15330.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.31e-11143855
                  HHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
           HLH  8 rErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
                  +Er RR+r+N+++  Lr ++Pk +      K++Ka+i++ A+ +I +Lq
  OB04G15330.1  1 MERDRRKRLNEKLYALRAVVPKiS------KMDKASIVRDAIAHIEKLQ 43
                  6*********************66......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.09E-14159IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.4E-11148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.94E-11147No hitNo description
Gene3DG3DSA:4.10.280.102.5E-14160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.2E-9143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.799142IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MERDRRKRLN EKLYALRAVV PKISKMDKAS IVRDAIAHIE KLQAEERRLL EEISALESTV  60
ATKSAAGAGD DDDGVPLLPR MKKPRTTPPP HDGASMAASP PLQILQELIV MNNPRSQLQV  120
SKVGERTMAV SIRCARTRDA MVKVCRAMEA LRLKVVSANV AAVDGSIVHT MFVQISSLTD  180
PSSNAS
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB04G15330.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015691398.11e-99PREDICTED: transcription factor bHLH35-like
TrEMBLJ3LWK81e-130J3LWK8_ORYBR; Uncharacterized protein
STRINGOB04G15330.11e-131(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP104438133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.21e-38bHLH family protein