PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OB04G16610.1

Organism

Oryza brachyantha

Taxonomic ID

4533

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 259aa MW: 28193.7 Da PI: 8.659

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OB04G16610.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	31.8	2.6e-10	84	131	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR+ri +++ L++l+P + +k Ka +L + ++Y++sLq OB04G16610.1 84 SHSLAERVRRERISERMKLLQSLVPGC----NKITGKALMLDEIINYVQSLQ 131 8************************....999***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	6.98E-11	78	135	No hit	No description
SuperFamily	SSF47459	2.36E-17	78	149	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.7E-16	80	148	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.612	80	130	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.5E-7	84	131	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.0E-9	86	136	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 259 aa Download sequence Send to blast
MSPSKPAAAE APARKRKSSA KGKASSSTMP AATAATTTNA SPKRTKVITG SGDGDGDDAA 60 AEEKPEPPKD YIHVRARRGQ ATDSHSLAER VRRERISERM KLLQSLVPGC NKITGKALML 120 DEIINYVQSL QRQVEFLSMK LATMNPQLDF DGHYLPSKDM SHMSLPAYPP NDLTTATAFS 180 YIDAPTTGDP FTTYNCWDQL DLHTAMQMGA TATDLNQDSP VATIAPSSSP LPHHPPPHHR 240 FYGRQQQQGT TVNHMKAEP

Cis-element ? help Back to Top
Source	Link
PlantRegMap	OB04G16610.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015691840.1	1e-146	PREDICTED: transcription factor bHLH77-like
Swissprot	Q9SRT2	4e-53	BH062_ARATH; Transcription factor bHLH62
TrEMBL	J3LWY6	0.0	J3LWY6_ORYBR; Uncharacterized protein
STRING	OB04G16610.1	0.0	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12547	28	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68920.3	2e-48	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]