PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB04G18180.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 290aa    MW: 30202.8 Da    PI: 10.5326
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB04G18180.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.98.1e-2172121255
           AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                   +y+GVr+++ +g+W+AeIrdp+    + +r++lg+f+tae+Aa a+++a+++++g
  OB04G18180.1  72 HYRGVRQRP-WGKWAAEIRDPK----KaARVWLGTFDTAEDAAIAYDEAALRFKG 121
                   7********.**********94....45***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.104.6E-3371130IPR001471AP2/ERF domain
PROSITE profilePS5103224.71172129IPR001471AP2/ERF domain
CDDcd000186.63E-3172130No hitNo description
SuperFamilySSF541712.35E-2272130IPR016177DNA-binding domain
SMARTSM003804.8E-3872135IPR001471AP2/ERF domain
PfamPF008471.2E-1372121IPR001471AP2/ERF domain
PRINTSPR003671.2E-117384IPR001471AP2/ERF domain
PRINTSPR003671.2E-1195111IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071497Biological Processcellular response to freezing
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MVSALAHVIR AAPGLQQLPA PSAAGPHAPG AFYPTAAAAS SSEHHHHRLG HSSSSSSASA  60
AAADEELGRR RHYRGVRQRP WGKWAAEIRD PKKAARVWLG TFDTAEDAAI AYDEAALRFK  120
GTKAKLNFPE RVQGRTDLGF LVTRGIPPPR LPGGRGECPP PPPMTAQHQQ QQTVVPYPDL  180
TQNAQLLQGG VRAEVQAGAA EATDLVMMGA GVNLPFGAVS PSSTISSSST SPQILDFSTR  240
QLIRASPPSP ATAMSGSGVT AASSTSSTTP ASSPGAWPYG PERKKKGPSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-2771133467ATERF1
3gcc_A3e-2771133467ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB04G18180.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1015011e-112AK101501.1 Oryza sativa Japonica Group cDNA clone:J033044C14, full insert sequence.
GenBankAK2874531e-112AK287453.1 Oryza sativa Japonica Group cDNA, clone: J043018P10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015636603.12e-83ethylene-responsive transcription factor ERF113
TrEMBLJ3LXE30.0J3LXE3_ORYBR; Uncharacterized protein
STRINGOB04G18180.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44473571
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13330.11e-22related to AP2 6l