PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB04G18780.1
Common NameLOC102721827
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family S1Fa-like
Protein Properties Length: 80aa    MW: 8875.56 Da    PI: 10.5244
Description S1Fa-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB04G18780.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1S1FA133.45.8e-421180270
          S1FA  2 avakvea.kGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70
                  +v ++e+ kGlnPG ivllvv++lll+f+vgny+ly+yaqk+lPPrkkkPvskkklkreklkqGv++PGe
  OB04G18780.1 11 NVIIEEVnKGLNPGTIVLLVVATLLLLFFVGNYALYMYAQKTLPPRKKKPVSKKKLKREKLKQGVSAPGE 80
                  55667778*************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0190139.0E-101280No hitNo description
PfamPF046899.4E-401680IPR006779DNA binding protein S1FA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 80 aa     Download sequence    Send to blast
MADQFTDSAN NVIIEEVNKG LNPGTIVLLV VATLLLLFFV GNYALYMYAQ KTLPPRKKKP  60
VSKKKLKREK LKQGVSAPGE
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically recognizes a negative element (S1F) within the RPS1 promoter. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB04G18780.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0722913e-95AK072291.1 Oryza sativa Japonica Group cDNA clone:J023018N16, full insert sequence.
GenBankAK2891333e-95AK289133.1 Oryza sativa Japonica Group cDNA, clone: J090099A10, full insert sequence.
GenBankAP0149603e-95AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBankBT1291573e-95BT129157.1 Oryza sativa clone RRlibA00156 mRNA sequence.
GenBankBT1305263e-95BT130526.1 Oryza sativa clone RRlibC01181 mRNA sequence.
GenBankCP0126123e-95CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006652250.12e-51PREDICTED: DNA-binding protein S1FA2
SwissprotQ7XLX62e-32S1FA2_ORYSJ; DNA-binding protein S1FA2
TrEMBLJ3LXK35e-50J3LXK3_ORYBR; Uncharacterized protein
STRINGOB04G18780.18e-51(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51543563
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]