PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB04G20220.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 412aa    MW: 44939.4 Da    PI: 6.442
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB04G20220.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS1395.1e-436028392296
          GRAS  92 kfshltaNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRpeg..............ppslRiTgvgspesgskeeleetgerLakfAeel 172
                   +f+h+taNqaI+ea+e+   +r+H++Dfd+s+G+QWp+L+q++++ ++               p slRiTg+gs    s++el+et+ rL++fA+++
  OB04G20220.1  60 EFAHFTANQAIVEAFESGgrRRLHVVDFDVSYGFQWPSLIQSMSDAASTttssshdddgrcdgPVSLRITGFGS----SADELRETEARLTRFAASC 152
                   69*************9876699*********************9877333445566677777689*********....9***************998 PP

          GRAS 173 .gvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe........adh.nsesFlerfle 259
                    ++++ef+ +  +  ++l  e++r++ + +++Vnlv+   +    + s e +  + +  + slsP +v ++e+          d  +s+s l  f+ 
  OB04G20220.1 153 pNLRLEFEGI-LNGSNSL-HERIRLDDDATVVVNLVFPAAQNA-TNSSREACVATAMAHIHSLSPSMVFLIEKHdgggdptgGDNaSSASVLPWFAA 246
                   79*******5.6666666.89****************888876.6666677899******************98555555543333666******** PP

          GRAS 260 aleyysalfdsleaklpreseerikvErellgreivn 296
                    l+y++a+fdsl++ lp++s er  +Er  lgrei +
  OB04G20220.1 247 NLRYFAAVFDSLHECLPADSAERLAIERNHLGREIGD 283
                   ***********************************77 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098526.2961349IPR005202Transcription factor GRAS
PfamPF035141.8E-4060283IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MNLTLSLGID GGAGAVAAKK KRKVVGDGGV MHGGDGVERG VRFVTRTRVP QARDRMVKKE  60
FAHFTANQAI VEAFESGGRR RLHVVDFDVS YGFQWPSLIQ SMSDAASTTT SSSHDDDGRC  120
DGPVSLRITG FGSSADELRE TEARLTRFAA SCPNLRLEFE GILNGSNSLH ERIRLDDDAT  180
VVVNLVFPAA QNATNSSREA CVATAMAHIH SLSPSMVFLI EKHDGGGDPT GGDNASSASV  240
LPWFAANLRY FAAVFDSLHE CLPADSAERL AIERNHLGRE IGDAFDILDS VKQTDLAVTL  300
NALVVERQHW QCKEVTLIAK EQTLPKFQRQ KTLNSLQPEE PPSPVIDRQL WRLGEREIFA  360
EYLSVEFSTR QRLLGGRRSE EELCSGNPDR KNGASWAAGG GISGASNVCR FR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A5e-194128793306Protein SCARECROW
5b3h_A5e-194128792305Protein SCARECROW
5b3h_D5e-194128792305Protein SCARECROW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11823KKKRKV
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB04G20220.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL6064581e-106AL606458.5 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0084A10, complete sequence.
GenBankAP0149601e-106AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBankCR8551011e-106CR855101.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: B0308C03, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015691459.10.0PREDICTED: scarecrow-like protein 18
TrEMBLJ3LXZ70.0J3LXZ7_ORYBR; Uncharacterized protein
STRINGOB04G20220.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP116493038
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63100.13e-22GRAS family protein