PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB04G20390.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ZF-HD
Protein Properties Length: 172aa    MW: 17902.9 Da    PI: 8.7478
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB04G20390.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer31.63.9e-102243526
   ZF-HD_dimer  5 rYkeClkNhAaslGghavDGCg 26
                  +YkeC++NhAa++Gg+a+DG g
  OB04G20390.1 22 KYKECMRNHAAAMGGQAFDGAG 43
                  7*******************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257742.0E-52243IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047701.3E-62243IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152313.0442382IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.606.0E-2943111IPR009057Homeodomain-like
SuperFamilySSF466892.35E-1843110IPR009057Homeodomain-like
TIGRFAMsTIGR015657.0E-2752109IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MMDHLSLVPY EGSSAGGGGG GKYKECMRNH AAAMGGQAFD GAGATGSGSF GRKRFRTKFT  60
PEQKERMREF AEKQGWRINR NDDGALDRFC LEIGVKRHVL KVWMHNHKNQ LASSPTSAAA  120
AAAVAGMNPL NPGTGIGLST GVGVGGAGDD DDTDDSPPRA AVSSPSPSPI SV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A1e-23531091874ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB04G20390.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL6066261e-120AL606626.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0088K19, complete sequence.
GenBankAL6067061e-120AL606706.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0086G13, complete sequence.
GenBankAP0149601e-120AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006653420.23e-76PREDICTED: zinc-finger homeodomain protein 8-like
SwissprotQ7X7N31e-39ZHD8_ORYSJ; Zinc-finger homeodomain protein 8
TrEMBLJ3LY141e-123J3LY14_ORYBR; Uncharacterized protein
STRINGOB04G20390.11e-124(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP136492225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75240.13e-24homeobox protein 33