PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OB04G20560.1

Common Name

LOC102716956

Organism

Oryza brachyantha

Taxonomic ID

4533

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

NAC

Protein Properties

Length: 201aa MW: 22564.2 Da PI: 5.0497

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OB04G20560.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	107.9	1.2e-33	7	124	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 lppGf+F P+deel+v++L++k++ +++ ++++++ ++ ++Pw+L+ k+ ++ ++wyfFs++ + +ra +g Wk g+d++v+s +g OB04G20560.1 7 LPPGFHFFPSDEELIVHFLRRKASLLPCRP-DIVPTLTLNLYDPWELNGKALQSGNQWYFFSHATQ--------TRASPNGHWKPIGSDETVVS-GG 93 79***********************999.89**********976667789**9754........688999**********.99 PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrl 128 +glkktL+f+ g+ +g kt+Wvmhey+l OB04G20560.1 94 CSIGLKKTLIFFMGEPIEGIKTSWVMHEYHL 124 ***************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.27E-46	3	165	IPR003441	NAC domain
PROSITE profile	PS51005	42.048	7	166	IPR003441	NAC domain
Pfam	PF02365	8.3E-21	8	124	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 201 aa Download sequence Send to blast
MAGASNLPPG FHFFPSDEEL IVHFLRRKAS LLPCRPDIVP TLTLNLYDPW ELNGKALQSG 60 NQWYFFSHAT QTRASPNGHW KPIGSDETVV SGGCSIGLKK TLIFFMGEPI EGIKTSWVMH 120 EYHLMDGNTD CSNSSTSSSS SKWPHKKKGQ SETESNNWVI CRVFESSYDS QVSFHEEGTE 180 LSCLDEVFLS LDDYDEVSFA K

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	6e-34	6	171	16	170	NO APICAL MERISTEM PROTEIN
1ut4_B	6e-34	6	171	16	170	NO APICAL MERISTEM PROTEIN
1ut7_A	6e-34	6	171	16	170	NO APICAL MERISTEM PROTEIN
1ut7_B	6e-34	6	171	16	170	NO APICAL MERISTEM PROTEIN
3swm_A	7e-34	6	171	19	173	NAC domain-containing protein 19
3swm_B	7e-34	6	171	19	173	NAC domain-containing protein 19
3swm_C	7e-34	6	171	19	173	NAC domain-containing protein 19
3swm_D	7e-34	6	171	19	173	NAC domain-containing protein 19
3swp_A	7e-34	6	171	19	173	NAC domain-containing protein 19
3swp_B	7e-34	6	171	19	173	NAC domain-containing protein 19
3swp_C	7e-34	6	171	19	173	NAC domain-containing protein 19
3swp_D	7e-34	6	171	19	173	NAC domain-containing protein 19
4dul_A	6e-34	6	171	16	170	NAC domain-containing protein 19
4dul_B	6e-34	6	171	16	170	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269\|PubMed:18069942, ECO:0000269\|PubMed:20458494}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	OB04G20560.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK243585	0.0	AK243585.1 Oryza sativa Japonica Group cDNA, clone: J100082O14, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006652313.1	1e-150	PREDICTED: NAC transcription factor NAM-B2-like
Swissprot	Q8GWK6	8e-59	NC104_ARATH; NAC domain-containing protein 104
TrEMBL	J3LY31	1e-148	J3LY31_ORYBR; Uncharacterized protein
STRING	OB04G20560.1	1e-149	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3667	36	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64530.1	7e-60	xylem NAC domain 1

Link Out ? help Back to Top
Entrez Gene	102716956

Publications ? help Back to Top
Zhao C, et al. XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED. New Phytol., 2017. 216(1): p. 76-89 [PMID:28742236] Tang N, et al. Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis. Nat Commun, 2018. 9(1): p. 3884 [PMID:30250259]