PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB04G20690.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 162aa    MW: 18473.3 Da    PI: 8.1213
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB04G20690.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.54e-0799122126
                   --S---SGGGGTS--TTTTT-SS-SS CS
       zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                   y+ e Cr++++   C++ ++C+FaH+
  OB04G20690.1  99 YGVEVCRDYLK-NMCNR-ESCRFAHP 122
                   899********.*****.*******9 PP
2zf-CCCH20.58.5e-07133155327
                   S---SGGGGTS--TTTTT-SS-SSS CS
       zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                    e Cr+f r G+C++ + C+F H+p
  OB04G20690.1 133 VEVCRDFKR-GECNR-PACRFYHPP 155
                   589******.*****.*******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.51125IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.915126IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.3E-4224IPR000571Zinc finger, CCCH-type
PfamPF146082.3423No hitNo description
SMARTSM003560.732953IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.2913354IPR000571Zinc finger, CCCH-type
PfamPF146080.783451No hitNo description
Gene3DG3DSA:4.10.1000.102.0E-497121IPR000571Zinc finger, CCCH-type
SMARTSM003564.7E-498123IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.33898124IPR000571Zinc finger, CCCH-type
PfamPF146080.0046104122No hitNo description
PROSITE profilePS5010312.286130156IPR000571Zinc finger, CCCH-type
SMARTSM003560.0064130155IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.9E-4132153IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-4133155IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MQVCRDFTRG RCSRSANECR FLHHSPVEDC AIVCQDFLRG RCDRKSCRYS HVMAHPMPPP  60
PMRDIPMQFP DMVYMPPPPL GVPMMMPPSA PAAFAGNNYG VEVCRDYLKN MCNRESCRFA  120
HPDLNNEVMN AQVEVCRDFK RGECNRPACR FYHPPASSNS IG
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB04G20690.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0606340.0AK060634.1 Oryza sativa Japonica Group cDNA clone:001-027-B10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015691465.11e-115PREDICTED: zinc finger CCCH domain-containing protein 28
SwissprotQ0JD078e-98C3H28_ORYSJ; Zinc finger CCCH domain-containing protein 28
TrEMBLJ3LY441e-114J3LY44_ORYBR; Uncharacterized protein
STRINGOB04G20690.11e-115(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP109041922
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]