PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB04G20960.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family FAR1
Protein Properties Length: 769aa    MW: 87362.9 Da    PI: 6.9998
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB04G20960.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR157.64.3e-18148244189
          FAR1   1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkk...tekerrtraetrtgCkaklkvkkek....dgkwevtkleleHnHel 89 
                   +fY+ +Ak++GFs+r+++++ +    +  t+r fvC + g++  +  +   + + +r+r ++r+gC+a +++ ++     d +w+vt ++++HnH+l
  OB04G20960.1 148 EFYSGFAKRCGFSIRRHRTEGKdGVGKGLTRRYFVCHRAGNSPAKPFAadaDARPQRNRRSSRCGCQAYMRIGRSVvaagDPEWRVTGFSNHHNHQL 244
                   6**************9998877356667999*********99988777666788889***************9987777789**************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.5E-15148245IPR004330FAR1 DNA binding domain
PfamPF105512.1E-19367458IPR018289MULE transposase domain
PROSITE profilePS509669.73644680IPR007527Zinc finger, SWIM-type
PfamPF044341.6E-7651680IPR007527Zinc finger, SWIM-type
SMARTSM005756.8E-6655682IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 769 aa     Download sequence    Send to blast
MGREGSGYLF LYPLFSLLFL RLPWCHLVYS TTEPCLVKLG SQLEQEEKKR GGQSEKERSR  60
GECPENPDAR MMPEESPSLL LECYGVDRLD QRLPSMEGLS SGEEGEEEEE EEGGSGFHDD  120
GTGLSPETAD DPVPYVGQRF PTHDAAYEFY SGFAKRCGFS IRRHRTEGKD GVGKGLTRRY  180
FVCHRAGNSP AKPFAADADA RPQRNRRSSR CGCQAYMRIG RSVVAAGDPE WRVTGFSNHH  240
NHQLLGQDQV RFLPAYRVVS GADRDRILTF AKSGISVQQM MRIMELEKRV EPGNLPFTEK  300
DVRNLIQSFR KFDQEENVDL IKMCRKFKEK DPDFKYEFTK DANNRLENIA WSFASSVQSY  360
EMYGDAVVFD TTHRLTALDM LLGIWVGLNN YGMPCFFGCA LLREENVQSF VWALKVFLNF  420
MNRKAPQTIL TDENMYLNEA IEKVLPGTKH ALCIWLISAR FPSWFDAVLG ELYNDWKNEF  480
YRLYKMESTM EFDLGWNDMA NCYGLNGNRH IASLFASRTR WALPYLRGQF SAGLLASGVT  540
SKSINAFIQR FLSAQTRLAH FIEQVAVYVE HNDQSEEQQM MQQNLQSIPC KASAPMEAHA  600
AAVLTSHAFS KLQDELAAAS QYASFHLEGN IFLVRHHTKT DGGCSVRWSQ REELISCSCQ  660
MFESAGILCR HALRVISTLN YFQIPDHYLP VRWRRTQPSP SKSLNGPHCG ESPERVRALQ  720
SMLSALVTEA SKSNERMDIA TQEVSGLLSR IRQQPVVVHV SGDGVHKQR
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB04G20960.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1005330.0AK100533.1 Oryza sativa Japonica Group cDNA clone:J023101L24, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006653439.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 11
SwissprotQ9SY660.0FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBLJ3LY710.0J3LY71_ORYBR; Uncharacterized protein
STRINGOB04G20960.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP151711516
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10240.10.0FAR1-related sequence 11
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]