PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB04G23300.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 212aa    MW: 23095.1 Da    PI: 9.6907
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB04G23300.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM331.7e-105015432128
           NAM  32 evikevdiykvePwdLp.k.......kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk...kgelvglkktLvfykgr.apk 115
                   ev   vd+y+++P  L               +e + +fFs  + +     +++r +  g+W   g dk+       +ge+v  ++ ++f++ r + +
  OB04G23300.1  50 EVTVGVDVYSAHPAALApLprcfwrgD--PcGEASRWFFSAGSPED---GERRRDALGGFWTRYGCDKAYAGGegsGGEAVAFRRRFAFFDRRgDGD 141
                   467889**********53355555431..13455667888876654...456677788***********99877778888**********5431334 PP

           NAM 116 gektdWvmheyrl 128
                      t+W m+eyrl
  OB04G23300.1 142 LAPTEWRMKEYRL 154
                   469********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100518.76812182IPR003441NAC domain
SuperFamilySSF1019411.83E-1525182IPR003441NAC domain
PfamPF023652.4E-625154IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MAKQSPRASA EHPDGEAFRR LTGRMVVTDY LVPVALRGAL PEGVVSLPGE VTVGVDVYSA  60
HPAALAPLPR CFWRGDPCGE ASRWFFSAGS PEDGERRRDA LGGFWTRYGC DKAYAGGEGS  120
GGEAVAFRRR FAFFDRRGDG DLAPTEWRMK EYRLNKRAAT SRGANQLDPE AKEYAVCKIY  180
NTGRIPGPPP LCLSVRRCRL RRGRGGAAEG SG
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB04G23300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLJ3LYV51e-150J3LYV5_ORYBR; Uncharacterized protein
STRINGOB04G23300.11e-150(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP128912231