PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB04G23430.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 244aa    MW: 27375.1 Da    PI: 5.8204
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB04G23430.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM55.91.5e-1748556128
           NAM  56 kewyfFskrdkkyatgkrknra.........tksgyWkatgkdkevlskkgelvglkktLvfykg.rapkgektdWvmheyrl 128
                   ++ +fF++ +++y +g+rk+r+          ++ +W++tgk+ke+++ +g ++g kk+Lv+ykg ++ k e+++Wvmh+y+l
  OB04G23430.1   4 SSSHFFHRISNAYGSGQRKRRKishhkhsasDENIRWHKTGKSKEIYH-NGVKKGWKKILVLYKGsKRDKIEQANWVMHQYNL 85 
                   4679*****************867777766544778************.999***********995667789*********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100522.5311104IPR003441NAC domain
SuperFamilySSF1019419.94E-212104IPR003441NAC domain
PfamPF023653.1E-6785IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MDGSSSHFFH RISNAYGSGQ RKRRKISHHK HSASDENIRW HKTGKSKEIY HNGVKKGWKK  60
ILVLYKGSKR DKIEQANWVM HQYNLGVEED EKNGEFVVCK VFFQSSSKQT CTPEMDSVTE  120
TSDALTVRSD PITPITNPPQ PLYPVNSPCD TEQNVTISHN QEGESSISTL RAKVEPENPG  180
GCSGTGTSTA EDFDESPPQR YGLRGDSVPP LEEEPFPELD LFNLADFCKF SSQDSFSWAD  240
GDQT
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB04G23430.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006653523.10.0PREDICTED: NAC domain-containing protein 8-like
TrEMBLJ3LYW80.0J3LYW8_ORYBR; Uncharacterized protein
STRINGOB04G23430.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21103799
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25580.13e-35NAC family protein