PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB04G27010.1
Common NameLOC102702463
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family YABBY
Protein Properties Length: 270aa    MW: 28480.2 Da    PI: 7.7969
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB04G27010.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY2108.5e-65282186170
         YABBY   6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkee.......................lleelkvee 79 
                     eq+Cyv+CnfC+tilav vP +slfk+vtvrCGhC++llsvnl+      aa+   +  + +                        ++e+   + 
  OB04G27010.1  28 EQEQLCYVHCNFCDTILAVGVPCSSLFKTVTVRCGHCANLLSVNLRGLLLPAAATAANQLPFGQAllsptsphglldevpsfqappslMTEQASPNV 124
                   579*******************************************998544444433344444444557889**999***9999876455555554 PP

         YABBY  80 enlksnvek..eesastsvsseklsenedeevpr.vppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                   ++++s +++  ++++ ts++s +  ++++ + p+ +  ++r  ekrqrvPsaynrfik+eiqrikasnPdi+hreafsaaaknWahfP+ihfgl
  OB04G27010.1 125 SSITSSNSScaNNAPATSMASATKATQREPQQPKnASSANRTSEKRQRVPSAYNRFIKDEIQRIKASNPDITHREAFSAAAKNWAHFPHIHFGL 218
                   554443333002222233333222333333444414559*****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046907.1E-7128218IPR006780YABBY protein
SuperFamilySSF470952.23E-7158211IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.102.9E-4170210IPR009071High mobility group box domain
CDDcd000848.43E-5172208No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MMSSASETFS LDHLAQHQQH PPPPPLAEQE QLCYVHCNFC DTILAVGVPC SSLFKTVTVR  60
CGHCANLLSV NLRGLLLPAA ATAANQLPFG QALLSPTSPH GLLDEVPSFQ APPSLMTEQA  120
SPNVSSITSS NSSCANNAPA TSMASATKAT QREPQQPKNA SSANRTSEKR QRVPSAYNRF  180
IKDEIQRIKA SNPDITHREA FSAAAKNWAH FPHIHFGLMP DQGLKKTGIQ SQEGAAGECM  240
LFKDGLYAAA AAAAAAAAAT AASSMGVTPF
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in leaf cell growth and differentiation, rather than abaxial cell fate determination. {ECO:0000250}.
UniProtMay be involved in leaf cell growth and differentiation, rather than abaxial cell fate determination. {ECO:0000269|PubMed:17351053}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB04G27010.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by WOX3. {ECO:0000269|PubMed:17351053}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2740170.0AB274017.1 Oryza sativa Japonica Group OsYABBY5 mRNA for OsYABBY5 protein, complete cds.
GenBankAK0702050.0AK070205.1 Oryza sativa Japonica Group cDNA clone:J023042I23, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015691831.10.0PREDICTED: protein YABBY 5
SwissprotQ01JG21e-160YAB5_ORYSI; Protein YABBY 5
SwissprotQ0JBF01e-160YAB5_ORYSJ; Protein YABBY 5
TrEMBLJ3LZX60.0J3LZX6_ORYBR; Uncharacterized protein
STRINGOB04G27010.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP144538121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45190.12e-55YABBY family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Khanday I, et al.
    Genome-Wide Targets Regulated by the OsMADS1 Transcription Factor Reveals Its DNA Recognition Properties.
    Plant Physiol., 2016. 172(1): p. 372-88
    [PMID:27457124]