PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB04G27190.1
Common NameLOC102705525
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GATA
Protein Properties Length: 428aa    MW: 45528.3 Da    PI: 8.1151
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB04G27190.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.12.9e-19348382135
          GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                   Cs+Cg+ kTp+WR gp+g ktLCnaCG++y++ +l
  OB04G27190.1 348 CSHCGVQKTPQWRAGPEGAKTLCNACGVRYKSGRL 382
                   *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011412.018342378IPR000679Zinc finger, GATA-type
SMARTSM004011.8E-18342396IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.42E-14345405No hitNo description
Gene3DG3DSA:3.30.50.102.0E-15346380IPR013088Zinc finger, NHR/GATA-type
CDDcd002025.46E-15347404No hitNo description
PROSITE patternPS003440348373IPR000679Zinc finger, GATA-type
PfamPF003203.0E-17348382IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MLHQTLIPSS SLSFPCSAPL SPPLLLRASN AAAATATATQ GSNTLRPPAM PSYAPHHSSL  60
DGKMEALKSS CRSEEAADEG AAAAPAAWGM VERDGFSVED LLDLEEFCEA EKDGGEEHEL  120
APVVAASQED MSKDESQQSS VVSFELVPPP PPPAEIVDLP AHDVEELEWV SRIMDDSLSE  180
LPPPPPPPAS VVASLAERQP QRRPQDGAYR ALPPASYPLR TPTICALSTE ALVPVKAKRS  240
KRSRASAWSL SGASPFSDST SSSSTTTTSS CSSSASFSPL LKFQWYPLSG TSDLPEDYSH  300
HLLPPGKKSK HGKNGKNKPK KRGRKPKQLP PHPSSAVGAA PAPGDRRCSH CGVQKTPQWR  360
AGPEGAKTLC NACGVRYKSG RLLPEYRPAC SPTFVSAIHS NSHRKVLEMR RKKEAGILTT  420
AAPAVASF
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB04G27190.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0605740.0AK060574.1 Oryza sativa Japonica Group cDNA clone:001-023-D04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015692212.10.0PREDICTED: GATA transcription factor 5-like
TrEMBLJ3LZZ40.0J3LZZ4_ORYBR; Uncharacterized protein
STRINGOB04G27190.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141733108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.21e-39GATA transcription factor 5