PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB04G27220.1
Common NameLOC102706095
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family DBB
Protein Properties Length: 245aa    MW: 26264.4 Da    PI: 5.1609
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB04G27220.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.81.7e-06443538
      zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
                   C+ +  + ++ fC  ++  lC+ C    H+       H+
  OB04G27220.1  4 QCDVCAAEAASVFCCADEAALCDACDRRVHSAnkvagkHR 43
                  7**************************9996566666666 PP
2zf-B_box26.31.5e-085790235
      zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHk 35
                  +++ C+ ++ek+  lfC++++  lC++C ++ H 
  OB04G27220.1 57 KPPLCDICQEKRGFLFCKEDRAILCRECDVAVHT 90
                  6899***************************994 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.883147IPR000315B-box-type zinc finger
SMARTSM003361.3E-10147IPR000315B-box-type zinc finger
CDDcd000219.27E-7347No hitNo description
PfamPF006432.0E-5444IPR000315B-box-type zinc finger
PROSITE profilePS5011910.16856103IPR000315B-box-type zinc finger
SMARTSM003363.4E-1456103IPR000315B-box-type zinc finger
PfamPF006437.2E-75790IPR000315B-box-type zinc finger
CDDcd000212.57E-859103No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009641Biological Processshade avoidance
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MKVQCDVCAA EAASVFCCAD EAALCDACDR RVHSANKVAG KHRRFSLLQP SSSCAQKPPL  60
CDICQEKRGF LFCKEDRAIL CRECDVAVHT TSELTRRHGR FLLTGVRLSS APMDSPAPSV  120
EEAEEDSSSP RSVTGTAAAS ANDGSSISEY LTKTLPGWHV EDFLVDEATA AAASSSSDGL  180
CQGGLAQIGG VPDDYAAWAG REQLLSDVAV AADERANRER WVPQMHAEWG AGSKRPRASP  240
PCLYW
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB04G27220.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0613330.0AK061333.1 Oryza sativa Japonica Group cDNA clone:006-303-A11, full insert sequence.
GenBankCT8301690.0CT830169.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA102E21, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006652591.11e-179PREDICTED: B-box zinc finger protein 20-like
TrEMBLJ3LZZ71e-178J3LZZ7_ORYBR; Uncharacterized protein
STRINGOB04G27220.11e-179(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23923679
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75540.16e-45salt tolerance homolog2