PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB04G27300.1
Common NameLOC102707208
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HD-ZIP
Protein Properties Length: 251aa    MW: 28012.3 Da    PI: 4.9747
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB04G27300.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.37e-2053106456
                   -SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
      Homeobox   4 RttftkeqleeLeelFek.nrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                   +++ft+eq++ Le++F+  + ++  +e++eLA++lgL+ rqV +WFqN+Ra+++
  OB04G27300.1  53 KRRFTDEQIRSLESMFHAhHAKLEPREKAELARELGLQPRQVAIWFQNKRARWR 106
                   458**************9899********************************9 PP
2HD-ZIP_I/II126.41.3e-4051144193
   HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeee.kLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                   e+krr+++eq+++LE++F++++ kLep++K+elareLglqprqva+WFqn+RAR+++kqlE+dy+aL+++ydal+++ ++L++e+ +L+++l+e
  OB04G27300.1  51 ERKRRFTDEQIRSLESMFHAHHaKLEPREKAELARELGLQPRQVAIWFQNKRARWRSKQLEHDYSALRAKYDALHSRVDSLKQEKLALTTQLHE 144
                   69******************999******************************************************************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.0E-1838110IPR009057Homeodomain-like
PROSITE profilePS5007117.57247108IPR001356Homeobox domain
SMARTSM003893.1E-2050112IPR001356Homeobox domain
CDDcd000865.29E-1952109No hitNo description
PfamPF000462.8E-1753106IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.605.0E-2053115IPR009057Homeodomain-like
PRINTSPR000316.1E-77988IPR000047Helix-turn-helix motif
PROSITE patternPS00027083106IPR017970Homeobox, conserved site
PRINTSPR000316.1E-788104IPR000047Helix-turn-helix motif
SuperFamilySSF902572.22E-5107182No hitNo description
PfamPF021834.9E-15108149IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MDRGDHLQHQ FLMPPPAPVV PQQHLCMPMM ADEQYLVGGG SAVPARGSAG ERKRRFTDEQ  60
IRSLESMFHA HHAKLEPREK AELARELGLQ PRQVAIWFQN KRARWRSKQL EHDYSALRAK  120
YDALHSRVDS LKQEKLALTT QLHELRERLR EREERSGTVA ATAAASSSSC NGGSEEGDDD  180
KRNVAAGCLD LDPPESCVLG GATCATPADV SVESDQCDDQ LDYDEGLIPE SFCATPELWE  240
PWPLVEWNAV A
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB04G27300.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}.
UniProtINDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY2244400.0AY224440.1 Oryza sativa (japonica cultivar-group) isolate 22834 homeodomain leucine zipper protein-like protein mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006652595.10.0PREDICTED: homeobox-leucine zipper protein HOX22-like
SwissprotQ01IK01e-117HOX22_ORYSI; Homeobox-leucine zipper protein HOX22
SwissprotQ7XUJ51e-117HOX22_ORYSJ; Homeobox-leucine zipper protein HOX22
TrEMBLJ3M0050.0J3M005_ORYBR; Uncharacterized protein
STRINGOB04G27300.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40273175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.17e-36homeobox 7