PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB04G27370.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Trihelix
Protein Properties Length: 183aa    MW: 20434.4 Da    PI: 11.0656
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB04G27370.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix29.71.7e-09768165
      trihelix  1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkik 65
                  +Wt +e+laL +a++ +  +++r+ l  ++W++v+++ +    ++++ qC++k e+l++r +  +
  OB04G27370.1  7 CWTPEETLALARAYTARRLSVGRAHLTSADWAAVADASSP---TKTARQCRHKVEKLRRRLRSKR 68
                  8**********************************97655...67899***********998766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138374.0E-8669No hitNo description
Gene3DG3DSA:1.10.10.604.7E-4863IPR009057Homeodomain-like
CDDcd001670.00675856No hitNo description
PROSITE profilePS500906.272861IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
GRFPPPCWTP EETLALARAY TARRLSVGRA HLTSADWAAV ADASSPTKTA RQCRHKVEKL  60
RRRLRSKRRR PCPLLDAIDL LDGPSPSASP SQSPSPPPPA SPPPPPPSPP KKRRMSDDAE  120
DDGESDVVKA LRAIGEGFLR AEQRRMEAAR KTQQMRMEMA LRHLDSQRRL MEALVDRIVH  180
SLE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15864KLRRRLR
25965LRRRLRS
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB04G27370.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006653630.11e-125PREDICTED: leiomodin-2-like, partial
TrEMBLJ3M0121e-125J3M012_ORYBR; Uncharacterized protein
STRINGOB04G27370.11e-126(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139112024