PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB04G27660.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 308aa    MW: 32401.5 Da    PI: 8.4973
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB04G27660.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP226.51.6e-08148193253
           AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkl 53 
                   +y+GVr+++ +g+++AeIrdp +ng     + gk g+   A ++a a r+kl
  OB04G27660.1 148 HYRGVRQRP-WGKFAAEIRDPAKNG----ARDGKEGS-VSATARAAASRRKL 193
                   8********.**********97776....33555555.55555555555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.109.1E-10147173IPR001471AP2/ERF domain
SuperFamilySSF541712.94E-5148173IPR016177DNA-binding domain
PROSITE profilePS5103210.771148187IPR001471AP2/ERF domain
SMARTSM003800.0023148189IPR001471AP2/ERF domain
PfamPF012772.2E-25231300IPR000136Oleosin
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0012511Cellular Componentmonolayer-surrounded lipid storage body
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MLLEVSHQAS VLDTIRQHLL EEPAEGRSNG GAGPVHARSA SFGSLVADMW SDSLPFRDDD  60
ADDMVVFGAM RDAFSCGWLP DGVFAEVKPE PLLSPASSYD GSCCFGFAGS EPVTPGEEVS  120
GAETAEAAAV VAEVHGKEEA AALARGKHYR GVRQRPWGKF AAEIRDPAKN GARDGKEGSV  180
SATARAAASR RKLHRMQRDK LGVQLGGATA RPPVNSSVRN GRRGGNRMHG GPVLVPAAIA  240
LALMAAGFIT SGGLGVAALS VFSWMYKYLT GKHPPGADQL DHAKARLASK ARDIKEAAQH  300
RIDQAQAS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-13144173130ATERF1
3gcc_A7e-13144173130ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB04G27660.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2431881e-138AK243188.1 Oryza sativa Japonica Group cDNA, clone: J100039E18, full insert sequence.
GenBankAL6070061e-138AL607006.4 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0079A21, complete sequence.
GenBankAP0149601e-138AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBankCP0126121e-138CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
GenBankEF0618881e-138EF061888.1 Oryza sativa (japonica cultivar-group) development related ERF protein (DRE) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015691532.11e-112PREDICTED: ethylene-responsive transcription factor 2-like
TrEMBLJ3M0410.0J3M041_ORYBR; Uncharacterized protein
STRINGOB04G27660.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38002972
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17500.13e-24ethylene responsive element binding factor 1