PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB04G27680.1
Common NameLOC102699779
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 334aa    MW: 35870.3 Da    PI: 4.9523
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB04G27680.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.96.8e-20149200256
           AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                   +y+GVr+++ +g+++AeIrdp+ +g   r++lg+++t+ eAa+a+++a+ +++g+
  OB04G27680.1 149 KYRGVRQRP-WGKFAAEIRDPKRRG--SRVWLGTYDTPVEAARAYDRAAFRMRGA 200
                   8********.**********96554..**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.8E-32148208IPR001471AP2/ERF domain
CDDcd000184.90E-30149208No hitNo description
PfamPF008471.7E-14149199IPR001471AP2/ERF domain
SMARTSM003801.0E-37149213IPR001471AP2/ERF domain
PROSITE profilePS5103224.144149207IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-22149208IPR016177DNA-binding domain
PRINTSPR003672.0E-13150161IPR001471AP2/ERF domain
PRINTSPR003672.0E-13189209IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MDFPGDVEDF ALEFIREHLL GGDASVPVRV PASLEVPDYV TFPVPPPPAA GVPAVVYPPS  60
VFLPQQQQQR GYVDLTPQEE YVDSVQVAEA AFREPEPAAE VMIMFGGERF PVKPSSMTVT  120
PPPSSFGWAP AGGPPAAAAA TGAVEDFRKY RGVRQRPWGK FAAEIRDPKR RGSRVWLGTY  180
DTPVEAARAY DRAAFRMRGA KAILNFPNEV GSRAGADMWA PPPPTSSKTA ATSKRKRQPE  240
DTADVVEVTG VANKAAKTEA PASYSSSLSS MSRDTTITCT SSTEMSTESE PTSFPVTPSS  300
GSWEQYWDAL LGGLPPLSPL SPHPALGFRQ LTVS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-27148212468ATERF1
3gcc_A6e-27148212468ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00549DAPTransfer from AT5G47230Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB04G27680.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1091411e-100AK109141.1 Oryza sativa Japonica Group cDNA clone:002-155-E09, full insert sequence.
GenBankAL6070061e-100AL607006.4 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0079A21, complete sequence.
GenBankAL7316131e-100AL731613.5 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0065H10, complete sequence.
GenBankAP0149601e-100AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBankAY3393791e-100AY339379.1 Oryza sativa (japonica cultivar-group) Ap26 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006653641.10.0PREDICTED: ethylene-responsive transcription factor 6
TrEMBLJ3M0430.0J3M043_ORYBR; Uncharacterized protein
STRINGOB04G27680.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47230.11e-32ethylene responsive element binding factor 5