PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB04G27840.1
Common NameLOC102702282
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 263aa    MW: 27645.5 Da    PI: 4.6126
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB04G27840.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.41.5e-1782131255
           AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                    y+GVr ++ +g+Wv+eIr+p++   + r++lg+f  +e+Aa+a++ a+++++g
  OB04G27840.1  82 TYRGVRMRS-WGKWVSEIREPRK---KSRIWLGTFPCPEMAARAHDVAALAIKG 131
                   69****998.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.105.0E-3182140IPR001471AP2/ERF domain
SMARTSM003802.2E-3682145IPR001471AP2/ERF domain
SuperFamilySSF541711.7E-2082140IPR016177DNA-binding domain
PfamPF008476.0E-1282131IPR001471AP2/ERF domain
PROSITE profilePS5103222.62982139IPR001471AP2/ERF domain
PRINTSPR003672.6E-98394IPR001471AP2/ERF domain
CDDcd000184.47E-3083141No hitNo description
PRINTSPR003672.6E-9105121IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MEQEQVLFQE SNCRTCSSSS NDASASSASS LNASSLSSVD SGSASAASSL NASSLSSVDS  60
GSASASAGGK KRRAHAELRH PTYRGVRMRS WGKWVSEIRE PRKKSRIWLG TFPCPEMAAR  120
AHDVAALAIK GRAAHLNFPE LAGELPCAAS KAPKDVQAAA ALAAATASPA PTPCHVDDDD  180
DAAATEGERE PAEPEQTAAR ACIVENGTLQ QDGGIGLDYA YFTMPDTLLE FGFTLPPPSF  240
CGSPWDDAAD DIFFGEPLVL WEH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-16801391272Ethylene-responsive transcription factor ERF096
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00312DAPTransfer from AT2G44940Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB04G27840.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006653649.10.0PREDICTED: ethylene-responsive transcription factor ERF034-like
TrEMBLJ3M0590.0J3M059_ORYBR; Uncharacterized protein
STRINGOB04G27840.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.15e-40ERF family protein