PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB04G27850.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 210aa    MW: 22297.6 Da    PI: 5.2949
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB04G27850.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2224e-074868223
           AP2  2 gykGVrwdkkrgrWvAeIrdps 23
                   y+GVr ++ +g+Wv+eIr+p+
  OB04G27850.1 48 TYRGVRMRS-WGKWVSEIREPR 68
                  69****998.**********84 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.5E-1348101IPR001471AP2/ERF domain
SMARTSM003805.3E-1348106IPR001471AP2/ERF domain
SuperFamilySSF541713.33E-948101IPR016177DNA-binding domain
PROSITE profilePS5103212.11548100IPR001471AP2/ERF domain
CDDcd000184.47E-1549102No hitNo description
PRINTSPR003672.3E-114960IPR001471AP2/ERF domain
PRINTSPR003672.3E-1182102IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MDDSHEPASP ASPDTASSSS TSSSSSSSSS SAAVAQKKRP RNDGRHPTYR GVRMRSWGKW  60
VSEIREPRKK SRWGKWVSEI SAHDVAALAI KGRAAHLNFP DLAHLLPRPA TAAPKDVQAA  120
ALLAAAADFP SEANAKSPDA CSFASAASPQ PPAPDAEPDP DNALFDLPDL LLDLRYETSS  180
SLSCGASWAV DDDVAGGGVF RLEEPMLWDY
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB04G27850.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1084731e-178AK108473.1 Oryza sativa Japonica Group cDNA clone:002-143-E08, full insert sequence.
GenBankAL6630001e-178AL663000.4 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0034G17, complete sequence.
GenBankAP0149601e-178AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBankAY2582821e-178AY258282.1 Oryza sativa (japonica cultivar-group) CR251 transcription factor gene, complete cds.
GenBankCP0126121e-178CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015634439.16e-77ethylene-responsive transcription factor ERF038
SwissprotQ8LBQ74e-35ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLJ3M0601e-146J3M060_ORYBR; Uncharacterized protein
STRINGOB04G27850.11e-147(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.16e-32ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]