PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OB04G28040.1

Common Name

LOC102714368

Organism

Oryza brachyantha

Taxonomic ID

4533

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C2H2

Protein Properties

Length: 313aa MW: 32699.2 Da PI: 7.6916

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OB04G28040.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.5	4.8e-05	5	26	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C+ C+++F ++ L H+r+H OB04G28040.1 5 TCKLCSRRFGSPRALAGHMRSH 26 6********************9 PP
2	zf-C2H2	11.6	0.00088	173	195	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp C+k+F++ L H +H OB04G28040.1 173 FQCPACKKVFRSYQALGGHRASH 195 89**********99999998887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	9.452	4	27	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.012	4	26	IPR015880	Zinc finger, C2H2-like
SuperFamily	SSF57667	1.19E-7	5	26	No hit	No description
Pfam	PF13912	8.2E-5	6	26	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	6	26	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.19E-7	168	195	No hit	No description
Pfam	PF13912	1.3E-11	172	197	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.026	173	195	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.286	173	195	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	175	195	IPR007087	Zinc finger, C2H2
Pfam	PF13912	3.8E-9	237	258	IPR007087	Zinc finger, C2H2
SMART	SM00355	86	237	257	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 313 aa Download sequence Send to blast
MAKNTCKLCS RRFGSPRALA GHMRSHSVAA TRSQISSTSS ASTSIAVGDD EGGGGDAKKQ 60 KPTVQGYVLR EKPKRRVRLA ESDFSDRESE TDYYSSPPGK RANIGSGDGE QVSSVSDAAT 120 SEEDVALSLM MLSRDSWPGP PPSYRSHGAG YDDGSDRGDA PPADAAAQKR TRFQCPACKK 180 VFRSYQALGG HRASHMRGGR GGCCAPPPNP PPSPATPLQP LPECDGGEEE DAKPQPHECP 240 HCFRVFASGQ ALGGHKRSQL CSAAAAAAAA ASGADLPATI KSNSFIDLNL PAPFDDVELS 300 AVSDPFLSSK PGS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	71	77	KPKRRVR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	OB04G28040.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK121993	0.0	AK121993.1 Oryza sativa Japonica Group cDNA clone:J033109L03, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006652618.1	0.0	PREDICTED: zinc finger protein ZAT1-like
TrEMBL	J3M079	0.0	J3M079_ORYBR; Uncharacterized protein
STRING	OB04G28040.1	0.0	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3518	33	77

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G02030.1	9e-29	C2H2-like zinc finger protein

Link Out ? help Back to Top
Entrez Gene	102714368