PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB04G28190.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 128aa    MW: 13832 Da    PI: 7.3434
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB04G28190.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS64.32.4e-2013112260365
          GRAS 260 aleyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesg 356
                    l+ ++ l++s++a  ++++++++k+Er+l++++++++v  + ++      ++  Wr++l +aGF p pls+ a++qa++ll++v+++g++ve+  +
  OB04G28190.1  13 LLQSCMCLLESIDAA-GTDADAASKIERFLIQPRVEDAVLGRCRA-----DKAIAWRSMLASAGFAPQPLSNLAEAQADCLLKRVQVQGFHVEKLGA 103
                   68999*******999.8999*******************987776.....88999****************************************** PP

          GRAS 357 slvlgWkdr 365
                    lvl+W+++
  OB04G28190.1 104 GLVLYWRSK 112
                   ******975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098510.0911101IPR005202Transcription factor GRAS
PfamPF035148.3E-1813112IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 128 aa     Download sequence    Send to blast
MALVFSQQSL ALLLQSCMCL LESIDAAGTD ADAASKIERF LIQPRVEDAV LGRCRADKAI  60
AWRSMLASAG FAPQPLSNLA EAQADCLLKR VQVQGFHVEK LGAGLVLYWR SKGSFHSNLP  120
TCHSALES
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB04G28190.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1007571e-113AK100757.1 Oryza sativa Japonica Group cDNA clone:J023118P13, full insert sequence.
GenBankAL6066331e-113AL606633.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0010H02, complete sequence.
GenBankAL6066471e-113AL606647.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0012E24, complete sequence.
GenBankAP0149601e-113AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015637143.13e-53scarecrow-like protein 27
TrEMBLJ3M0941e-87J3M094_ORYBR; Uncharacterized protein
STRINGOB04G28190.12e-88(Oryza brachyantha)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.12e-23GRAS family protein