PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OB04G28350.1

Organism

Oryza brachyantha

Taxonomic ID

4533

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 581aa MW: 63395.9 Da PI: 4.6946

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OB04G28350.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	43.1	7.5e-14	397	444	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++h + ErrRR+++N+ f L++l+P+ +K++Ka+iL +++ Y+k+L+ OB04G28350.1 397 KNHVMSERRRREKLNEMFMILKSLVPSV-----RKVDKASILAETIAYLKELE 444 5899*********************7.....6**************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF14215	4.8E-49	19	196	IPR025610	Transcription factor MYC/MYB N-terminal
PROSITE profile	PS50888	16.622	394	443	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.32E-17	397	458	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	7.88E-16	397	448	No hit	No description
Gene3D	G3DSA:4.10.280.10	8.4E-17	398	460	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.8E-11	398	444	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.1E-16	400	449	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009957	Biological Process	epidermal cell fate specification
GO:0005634	Cellular Component	nucleus
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 581 aa Download sequence Send to blast
MASAPVQEQH LQPGTKHFRN QLAAAVRSIG WSYAIFWSIS TSRPVVLAWK DGFYNGEVKT 60 RKISNSEELT AEQRVLQRSE QLRELYCSLL SGECDHRARR PMAALSPEDL GDAEWYYVIC 120 MTYIFRLGQG LPGKSFASNA PVWLYNAQSA DTNTFLRALL AKTIVCIPFM SGVLELGTTD 180 LVSEDPNLVN RIVASFREPQ FPTFLEVPSS SPSPDDMEDA DPVFEGFIDH NAIEQEQTVV 240 VVPPGEHELG DAVVVAANDD LDQVTMEIDE LYSFCEELDL DLDMDVVRFL EDTAGLPVNP 300 GRSFQLVPTT TSSSLEAAAA NDGDAVGDAV ANSRASCFVA WKRASCSDEA MAAVPVTGIE 360 PQKFLKKAVD GGAWMSSNDG DGRDGRVAIM AQESSIKNHV MSERRRREKL NEMFMILKSL 420 VPSVRKVDKA SILAETIAYL KELEKRVKEL ESSSEASARQ RRRREIAGGK VCVVGGGGGD 480 AGREQHRVVI SQQEGAPAAN VDVTVAGKVV VLDVQCRWKE LVMTRVFDAI KSLSLDVLSV 540 QASAPDGLLG LKIQAKFACS GAVAPGMISE ELQKAIGSYY C

Sequence ? help Back to Top

Protein Sequence Length: 581 aa Download sequence Send to blast

MASAPVQEQH LQPGTKHFRN QLAAAVRSIG WSYAIFWSIS TSRPVVLAWK DGFYNGEVKT  60
RKISNSEELT AEQRVLQRSE QLRELYCSLL SGECDHRARR PMAALSPEDL GDAEWYYVIC  120
MTYIFRLGQG LPGKSFASNA PVWLYNAQSA DTNTFLRALL AKTIVCIPFM SGVLELGTTD  180
LVSEDPNLVN RIVASFREPQ FPTFLEVPSS SPSPDDMEDA DPVFEGFIDH NAIEQEQTVV  240
VVPPGEHELG DAVVVAANDD LDQVTMEIDE LYSFCEELDL DLDMDVVRFL EDTAGLPVNP  300
GRSFQLVPTT TSSSLEAAAA NDGDAVGDAV ANSRASCFVA WKRASCSDEA MAAVPVTGIE  360
PQKFLKKAVD GGAWMSSNDG DGRDGRVAIM AQESSIKNHV MSERRRREKL NEMFMILKSL  420
VPSVRKVDKA SILAETIAYL KELEKRVKEL ESSSEASARQ RRRREIAGGK VCVVGGGGGD  480
AGREQHRVVI SQQEGAPAAN VDVTVAGKVV VLDVQCRWKE LVMTRVFDAI KSLSLDVLSV  540
QASAPDGLLG LKIQAKFACS GAVAPGMISE ELQKAIGSYY C

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5t0f_A	8e-20	18	192	9	188	Transcription factor MYC3
5t0q_A	8e-20	18	192	9	188	Transcription factor MYC3
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	402	407	ERRRRE
2	403	408	RRRREK

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcriptional activator. Control tissue-specific synthesis of anthocyanin pigments in various parts of the maize plant.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	OB04G28350.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006653663.1	0.0	PREDICTED: anthocyanin regulatory R-S protein-like
Refseq	XP_015692285.1	0.0	PREDICTED: anthocyanin regulatory R-S protein-like
Swissprot	P13027	1e-170	ARRS_MAIZE; Anthocyanin regulatory R-S protein
TrEMBL	J3M0B0	0.0	J3M0B0_ORYBR; Uncharacterized protein
STRING	OB04G28350.1	0.0	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP932	33	109

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G63650.3	2e-58	bHLH family protein

Publications ? help Back to Top
Pattanaik S,Xie CH,Yuan L The interaction domains of the plant Myc-like bHLH transcription factors can regulate the transactivation strength. Planta, 2008. 227(3): p. 707-15 [PMID:18075757] Huang ZA, et al. The upregulation of NtAN2 expression at low temperature is required for anthocyanin accumulation in juvenile leaves of Lc-transgenic tobacco (Nicotiana tabacum L.). J Genet Genomics, 2012. 39(3): p. 149-56 [PMID:22464474] Perrot GH,Cone KC Nucleotide sequence of the maize R-S gene. Nucleic Acids Res., 1989. 17(19): p. 8003 [PMID:2798145] Li P, et al. Combined bulked segregant sequencing and traditional linkage analysis for identification of candidate gene for purple leaf sheath in maize. PLoS ONE, 2018. 13(1): p. e0190670 [PMID:29304111]