PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OB04G28390.1

Organism

Oryza brachyantha

Taxonomic ID

4533

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 594aa MW: 65053.8 Da PI: 5.3519

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OB04G28390.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.3	1.1e-12	375	422	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 ++h + ErrRR+++N+ f L++++P+ K++Ka+iL +++ Y+k+L+ OB04G28390.1 375 KNHVMSERRRREKLNEMFLILKSVVPSiH------KVDKASILAETIAYLKELE 422 5899*********************66......**************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF14215	7.0E-53	13	195	IPR025610	Transcription factor MYC/MYB N-terminal
PROSITE profile	PS50888	15.859	372	421	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.88E-15	375	426	No hit	No description
SuperFamily	SSF47459	1.05E-17	375	439	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.7E-10	376	422	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.3E-17	376	431	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.4E-15	378	427	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0016021	Cellular Component	integral component of membrane
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 594 aa Download sequence Send to blast
MEEPLLPSGN NFRSKLAAAV RSINWTYAIF WSISTSRPGV LTWKDGFYNG EIKTRKITNS 60 RNLTADELVL QRSEQLRELY DSLLSGECDH RARRPPAALS PEDLADTEWY YVICMTYAFR 120 PGQGLPGKSF ASNEFVWLSN AHSADRKTFQ RVLIAKSASI KTILCVPFMH GVLELGTTDP 180 VSEDAALVDR IAASFGEEPS SIPPSNDEAG DADVVFEDLD HADTVEAMVP GERRDELGLR 240 EVAECGSNAL DLEQITMEIG ELYGFCEELD DVGRSLEDSS WAAAVDPWSF QLVPTSSSPE 300 AARAATVVAL DGRFVDGSCR SSSCFVAWKR TGSDEVAVPF AGGESQRLLK KAVAGGGWVN 360 NGDGAAVITP GSSIKNHVMS ERRRREKLNE MFLILKSVVP SIHKVDKASI LAETIAYLKE 420 LEKRVQELES SSQPSPCPTD QTRRRRCREI TGKKVSAGVK RKASTPEAAG SEDEDTDGEE 480 RHHHRVSNVN VTVMETKEEV LLEVQCQWKE LLMARVFDAI KGVSLDVLSV KASTSHSLLK 540 LKIQAKVSAA AKSSSQQKCS ICLLSLHLYL LAFGVLMLAI LFCSLPALPP SNLG

Sequence ? help Back to Top

Protein Sequence Length: 594 aa Download sequence Send to blast

MEEPLLPSGN NFRSKLAAAV RSINWTYAIF WSISTSRPGV LTWKDGFYNG EIKTRKITNS  60
RNLTADELVL QRSEQLRELY DSLLSGECDH RARRPPAALS PEDLADTEWY YVICMTYAFR  120
PGQGLPGKSF ASNEFVWLSN AHSADRKTFQ RVLIAKSASI KTILCVPFMH GVLELGTTDP  180
VSEDAALVDR IAASFGEEPS SIPPSNDEAG DADVVFEDLD HADTVEAMVP GERRDELGLR  240
EVAECGSNAL DLEQITMEIG ELYGFCEELD DVGRSLEDSS WAAAVDPWSF QLVPTSSSPE  300
AARAATVVAL DGRFVDGSCR SSSCFVAWKR TGSDEVAVPF AGGESQRLLK KAVAGGGWVN  360
NGDGAAVITP GSSIKNHVMS ERRRREKLNE MFLILKSVVP SIHKVDKASI LAETIAYLKE  420
LEKRVQELES SSQPSPCPTD QTRRRRCREI TGKKVSAGVK RKASTPEAAG SEDEDTDGEE  480
RHHHRVSNVN VTVMETKEEV LLEVQCQWKE LLMARVFDAI KGVSLDVLSV KASTSHSLLK  540
LKIQAKVSAA AKSSSQQKCS ICLLSLHLYL LAFGVLMLAI LFCSLPALPP SNLG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5t0f_A	2e-23	10	191	7	188	Transcription factor MYC3
5t0q_A	2e-23	10	191	7	188	Transcription factor MYC3
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	380	385	ERRRRE
2	381	386	RRRREK

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcriptional activator. Control tissue-specific synthesis of anthocyanin pigments in various parts of the maize plant.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	OB04G28390.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015692378.1	0.0	PREDICTED: anthocyanin regulatory Lc protein-like isoform X1
Swissprot	P13526	1e-170	ARLC_MAIZE; Anthocyanin regulatory Lc protein
TrEMBL	J3M0B4	0.0	J3M0B4_ORYBR; Uncharacterized protein
STRING	OB04G28390.1	0.0	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP932	33	109

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G63650.3	7e-93	bHLH family protein

Publications ? help Back to Top
Pattanaik S,Xie CH,Yuan L The interaction domains of the plant Myc-like bHLH transcription factors can regulate the transactivation strength. Planta, 2008. 227(3): p. 707-15 [PMID:18075757] Huang ZA, et al. The upregulation of NtAN2 expression at low temperature is required for anthocyanin accumulation in juvenile leaves of Lc-transgenic tobacco (Nicotiana tabacum L.). J Genet Genomics, 2012. 39(3): p. 149-56 [PMID:22464474] Ludwig SR,Habera LF,Dellaporta SL,Wessler SR Lc, a member of the maize R gene family responsible for tissue-specific anthocyanin production, encodes a protein similar to transcriptional activators and contains the myc-homology region. Proc. Natl. Acad. Sci. U.S.A., 1989. 86(18): p. 7092-6 [PMID:2674946] Li P, et al. Combined bulked segregant sequencing and traditional linkage analysis for identification of candidate gene for purple leaf sheath in maize. PLoS ONE, 2018. 13(1): p. e0190670 [PMID:29304111]