PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB04G28940.1
Common NameLOC102700890
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family G2-like
Protein Properties Length: 304aa    MW: 32763.3 Da    PI: 8.8453
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB04G28940.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like98.45.1e-312174255
       G2-like  2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                  prlrWt eLH +Fv+a+e LGG++kAtPk il+lm+vkgLt++hvkSHLQ+YR 
  OB04G28940.1 21 PRLRWTAELHCSFVQAIEFLGGQDKATPKLILQLMGVKGLTISHVKSHLQMYRC 74
                  8****************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.6281777IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.5E-291775IPR009057Homeodomain-like
SuperFamilySSF466891.13E-151974IPR009057Homeodomain-like
TIGRFAMsTIGR015571.3E-232174IPR006447Myb domain, plants
PfamPF002491.7E-72273IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MGGGGGGRNG AVRQYIRSKV PRLRWTAELH CSFVQAIEFL GGQDKATPKL ILQLMGVKGL  60
TISHVKSHLQ MYRCSRLGSH ATGRRSEMQP QLQRKHSCAA DEQVPKEFLS PPLKRTRMGT  120
EATYKGMQGS QGISEMRTTG TQYCIDDYMQ AMAMERRIKE EGLRWQQRDA AAAAADGGAA  180
ASNLQTVGCS VQESDPFKII KPEVHRLGTV VKLRCSKPES TGFASSSIST AARDRQEESP  240
EKCSLSLCLG PDPRCMPAIA SSPSESSCII SSSSSRSFSD CSGNSGCFVA PGVNLELSMS  300
ICGS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A3e-172276357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B3e-172276357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C3e-172276357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D3e-172276357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB04G28940.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1018490.0AK101849.1 Oryza sativa Japonica Group cDNA clone:J033069K05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006652650.10.0PREDICTED: uncharacterized protein LOC102700890
TrEMBLJ3M0G90.0J3M0G9_ORYBR; Uncharacterized protein
STRINGOB04G28940.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29663583
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14600.11e-30G2-like family protein