PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB04G29390.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRF
Protein Properties Length: 227aa    MW: 23994.4 Da    PI: 10.1162
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB04G29390.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC802.2e-25137181145
           WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                   ++epgrCrRtDGKkWRCsr+v++g+k+CErH+hrgr rsrk++e+
  OB04G29390.1 137 EPEPGRCRRTDGKKWRCSRDVVPGHKYCERHVHRGRGRSRKPMEA 181
                   69***************************************9997 PP
2QLQ51.53.1e-1870106137
           QLQ   1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                   sa+T +Q q+L++Q+l+y+++aa+ PvP +L+++i+k
  OB04G29390.1  70 SALTFMQRQELEHQVLIYRCFAAGSPVPVHLVLPIWK 106
                   799*********************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009511.6E-570106IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166620.61971106IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088809.9E-1171105IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.072137181IPR014977WRC domain
PfamPF088798.8E-21138179IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MLAEGRQVYS PPPSKLPRLS GTEPNDGVVT MAAPSPLVLG LGLGVGGSGS DSSGSDAEAS  60
AVTMREGRPS ALTFMQRQEL EHQVLIYRCF AAGSPVPVHL VLPIWKSVAA ASSFGPQSFP  120
SLTGLGSLCF DYRSSMEPEP GRCRRTDGKK WRCSRDVVPG HKYCERHVHR GRGRSRKPME  180
ASVPVAPTSL PVRPALHTAA SAPSPPRLGF SSDGASVLLA HTTARAT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1170178GRGRSRKPM
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB04G29390.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1109340.0AK110934.1 Oryza sativa Japonica Group cDNA clone:002-173-G02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015691549.11e-124PREDICTED: growth-regulating factor 12-like
SwissprotQ6AWX71e-117GRF12_ORYSJ; Growth-regulating factor 12
TrEMBLJ3M0L41e-161J3M0L4_ORYBR; Uncharacterized protein
STRINGOB04G29390.11e-162(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62213051
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36400.12e-35growth-regulating factor 3
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]