PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB04G29620.1
Common NameLOC102711613
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 632aa    MW: 66400.2 Da    PI: 8.501
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB04G29620.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS2739.6e-842656322374
          GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                   ++lL e+A+a+++g+le a + La l+  a+++gd  qRl+a+++ AL++r+++      +++p+++ ++   +e+ +  +l++++sP+++++  +a
  OB04G29620.1 265 RQLLSEAATAIADGHLETAATHLAALKRAANSRGDVEQRLVAMMVPALSSRIVQ-----TASVPSQHVPDLCGAEQRTGSQLLHDISPCFRLGLQAA 356
                   689**************************************************9.....4556666666555888888889**************** PP

          GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg....skeeleetgerLakfAeelgvpfefnvlvakrledlel 191
                   N aI++a+  ++++H +Dfd+s + Q + L++ La+R+ +  sl++T+v +p+s      k++l + ge+L+k+Ae+ g++ +f++ v+ r +++e 
  OB04G29620.1 357 NLAIVDAIGDHRAIHLVDFDVSAP-QHADLIRCLAARRLPGTSLKVTAVTDPSSPftqsLKTTLPAAGEQLQKIAERAGIDYRFKM-VSCRAAEIEA 451
                   *********************987.99************************9988787778899999******************9.7899****** PP

          GRAS 192 eeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvEre 288
                   ++L ++ gEalaVnl+++l +++desvs +++rde+L+ v+ l P+vv +veqe++ n++++ +rf++a+ +y a+++sl++++pres er+  E++
  OB04G29620.1 452 SKLGCEAGEALAVNLAFALSHVPDESVSPANPRDEILRRVRALGPQVVALVEQELNSNTAPLTTRFADACAHYGAILESLDVTFPRESAERARAEAA 548
                   ************************************************************************************************* PP

          GRAS 289 llgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                    l+ ++ n+v  eg er er   ++k r+r+++aG +pv+l+  +a+q+ +  r+ + + g+ v+ e+g l lgW++r ++++SaWr
  OB04G29620.1 549 -LAGRAANAVGREGPERLERGGGFGKGRARVGMAGVRPVALGPGIADQVLA--RQGPvVAGFAVKAENGVLRLGWMGRVVTVASAWR 632
                   .666678****************************************9855..5555569**************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098538.908238613IPR005202Transcription factor GRAS
PfamPF035143.3E-81265632IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
Sequence ? help Back to Top
Protein Sequence    Length: 632 aa     Download sequence    Send to blast
MEPWRDPHHQ TYPYGGVVRS AVQVTMQQRS DAAAAAAGGV LKRSLGDMER WRKQQQQQRQ  60
LALQQQLFMR TVRQRTAAAS AAVSPLTSAD IAAVLGGPPS QPLVLSGSSM GGTLGSPSST  120
LSSLTTASRA MAMPLTQPQL HLQRQHVTYT PSPQVQVLGT ARALAPPAAA SDMSILQELE  180
KQLLGDDDEV EAAMSGTRSP VTGSEWEEQL NSITTAPSPP LPAAMTPNNN NNNAVGMTRS  240
PSNSSTSTAS SSASCSPPTS ATTSRQLLSE AATAIADGHL ETAATHLAAL KRAANSRGDV  300
EQRLVAMMVP ALSSRIVQTA SVPSQHVPDL CGAEQRTGSQ LLHDISPCFR LGLQAANLAI  360
VDAIGDHRAI HLVDFDVSAP QHADLIRCLA ARRLPGTSLK VTAVTDPSSP FTQSLKTTLP  420
AAGEQLQKIA ERAGIDYRFK MVSCRAAEIE ASKLGCEAGE ALAVNLAFAL SHVPDESVSP  480
ANPRDEILRR VRALGPQVVA LVEQELNSNT APLTTRFADA CAHYGAILES LDVTFPRESA  540
ERARAEAALA GRAANAVGRE GPERLERGGG FGKGRARVGM AGVRPVALGP GIADQVLARQ  600
GPVVAGFAVK AENGVLRLGW MGRVVTVASA WR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-352606321375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB04G29620.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1002940.0AK100294.1 Oryza sativa Japonica Group cDNA clone:J023075P18, full insert sequence.
GenBankCT8312090.0CT831209.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA055J15, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006652686.10.0PREDICTED: scarecrow-like protein 8
TrEMBLJ3M0N70.0J3M0N7_ORYBR; Uncharacterized protein
STRINGOB04G29620.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP41883474
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.16e-70SCARECROW-like 8