PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB04G30520.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 261aa    MW: 29016.7 Da    PI: 6.3012
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB04G30520.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.69.2e-161564148
                     TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg..tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd  lv+ +k+ Gg+  +W++ +r  g++R++k+c++rw +yl
     OB04G30520.1 15 KGPWTEEEDRALVEHIKKQGGHvgSWRSLPRAAGLNRCGKSCRLRWTNYL 64
                     79**********************************************97 PP
2Myb_DNA-binding54.62.6e-1770114147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg+++ eE+ l+v++++ lG++ W+tIa ++  gRt++++k++w+++
     OB04G30520.1  70 RGNFSDEEERLIVRLHAALGNK-WSTIATHLD-GRTDNEIKNYWNTH 114
                      89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-21767IPR009057Homeodomain-like
PROSITE profilePS5129416.321064IPR017930Myb domain
SuperFamilySSF466893.95E-2812111IPR009057Homeodomain-like
SMARTSM007173.9E-111466IPR001005SANT/Myb domain
PfamPF002491.9E-131564IPR001005SANT/Myb domain
CDDcd001672.40E-91764No hitNo description
PROSITE profilePS5129426.71365119IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.3E-2668119IPR009057Homeodomain-like
SMARTSM007179.1E-1669117IPR001005SANT/Myb domain
PfamPF002495.5E-1570114IPR001005SANT/Myb domain
CDDcd001679.05E-1272115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MGRSPCCCHD AGVKKGPWTE EEDRALVEHI KKQGGHVGSW RSLPRAAGLN RCGKSCRLRW  60
TNYLRPDIKR GNFSDEEERL IVRLHAALGN KWSTIATHLD GRTDNEIKNY WNTHIKKKLL  120
RMGIDPLLSA INSNNDVAAG LMGMANLAAT NAMVSPTSTV ANHQPSYLCD VPSFSGQDMA  180
EQQRLSSSDT TAPPVLIRSS AEPVDHQCCN DAALVPETYP QGVTAIVDWQ MQEFSNLEPL  240
DLELPNLCSL ESDLDPFWRT Y
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-26151197108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB04G30520.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2432711e-158AK243271.1 Oryza sativa Japonica Group cDNA, clone: J100049K04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020169249.11e-100transcription factor MYB39-like
RefseqXP_020198492.11e-100transcription factor MYB39-like
SwissprotQ9S9Z23e-64MYB93_ARATH; Transcription factor MYB93
TrEMBLJ3M0X70.0J3M0X7_ORYBR; Uncharacterized protein
STRINGOB04G30520.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62652955
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02940.12e-67myb domain protein 107
Publications ? help Back to Top
  1. Gibbs DJ,Coates JC
    AtMYB93 is an endodermis-specific transcriptional regulator of lateral root development in arabidopsis.
    Plant Signal Behav, 2014. 9(10): p. e970406
    [PMID:25482809]