PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OB04G30960.1

Common Name

LOC102707954

Organism

Oryza brachyantha

Taxonomic ID

4533

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

G2-like

Protein Properties

Length: 279aa MW: 30703.8 Da PI: 8.4501

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OB04G30960.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	107.2	8.8e-34	22	76	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWtp+LHerFv+av++LGG++kAtPk++l+lm++kgLtl+h+kSHLQkYRl OB04G30960.1 22 KPRLRWTPDLHERFVDAVTKLGGPDKATPKSVLRLMGMKGLTLYHLKSHLQKYRL 76 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.928	19	79	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.2E-32	19	78	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.18E-16	21	78	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.4E-24	22	77	IPR006447	Myb domain, plants
Pfam	PF00249	1.5E-9	24	75	IPR001005	SANT/Myb domain
Pfam	PF14379	2.0E-22	122	167	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 279 aa Download sequence Send to blast
MFQGMEGCYG GVTAAAPARA PKPRLRWTPD LHERFVDAVT KLGGPDKATP KSVLRLMGMK 60 GLTLYHLKSH LQKYRLGRQN KNSGGLELAE SGGHTVEGIS FSIGAPPTPR NPAGGNDTGE 120 IPLTDALRYQ VEVQRKLQEQ LEVQKKLQMR IEAQGRYLKE ILEKAQKNIS LDANGPANLA 180 STRSQITDIS LALSGFMDNA TQVHEQNNEL VKAISDDNIK VNNLGFQLYH VGSQESEDVR 240 CTPKTEDLLL LDLNIKGGYE LSSRGTQGCE LDLKINQQR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	2e-21	22	78	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-21	22	78	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-21	22	78	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-21	22	78	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	OB04G30960.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK106400	1e-179	AK106400.1 Oryza sativa Japonica Group cDNA clone:002-102-G05, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006652754.2	0.0	PREDICTED: myb family transcription factor APL-like
TrEMBL	J3M121	0.0	J3M121_ORYBR; Uncharacterized protein
STRING	OB04G30960.1	0.0	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3940	34	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G45580.1	5e-44	G2-like family protein

Link Out ? help Back to Top
Entrez Gene	102707954