PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB04G32080.1
Common NameLOC102714733
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MIKC_MADS
Protein Properties Length: 239aa    MW: 27917.2 Da    PI: 8.9621
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB04G32080.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF84.94.9e-27959151
                  S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
        SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                  k+ien +nrqvtfskRr g+lKKA+EL +LCda++ viifs tgk+yeyss
  OB04G32080.1  9 KKIENLTNRQVTFSKRRMGLLKKANELAILCDAQIGVIIFSGTGKMYEYSS 59
                  68***********************************************96 PP
2K-box53.11.4e-18851591488
         K-box  14 aeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelq 88 
                   +++  +e++++k+e + L+   ++++G+dL sL+l++  +Leqq+e sl k+R +K++ll +q+ + +++e ++ 
  OB04G32080.1  85 QQKIIHEMTRMKDESNRLRIIMKQYMGDDLASLTLQDVSNLEQQIEFSLYKVRLRKQQLLDQQLLDIRNREMQIP 159
                   678889*****************************************************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.4E-38160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006630.74161IPR002100Transcription factor, MADS-box
CDDcd002651.09E-37276No hitNo description
SuperFamilySSF554551.83E-29279IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004043.6E-28323IPR002100Transcription factor, MADS-box
PfamPF003192.9E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004043.6E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004043.6E-283859IPR002100Transcription factor, MADS-box
PfamPF014861.9E-1681159IPR002487Transcription factor, K-box
PROSITE profilePS5129711.79585175IPR002487Transcription factor, K-box
PROSITE profilePS500087.977183237IPR001711Phospholipase C, phosphatidylinositol-specific, Y domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006629Biological Processlipid metabolic process
GO:0035556Biological Processintracellular signal transduction
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0004435Molecular Functionphosphatidylinositol phospholipase C activity
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MGRGKVELKK IENLTNRQVT FSKRRMGLLK KANELAILCD AQIGVIIFSG TGKMYEYSSA  60
PWRITNIFDR YLKAPSTRFE EMDVQQKIIH EMTRMKDESN RLRIIMKQYM GDDLASLTLQ  120
DVSNLEQQIE FSLYKVRLRK QQLLDQQLLD IRNREMQIPG DQSNYLCHMN LASDQTQAAA  180
MVNPKPFPWW DVGSQMYNQD AESSMTALQL SPQLHEYKLQ PLQPNLQEAN LHGYVLRLW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A9e-17160160MEF2C
5f28_B9e-17160160MEF2C
5f28_C9e-17160160MEF2C
5f28_D9e-17160160MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB04G32080.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1776980.0AY177698.1 Oryza sativa (japonica cultivar-group) transcription factor MADS31 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015691696.11e-180PREDICTED: MADS-box transcription factor 31-like isoform X2
SwissprotQ84NC22e-92MAD31_ORYSJ; MADS-box transcription factor 31
TrEMBLJ3M1D31e-178J3M1D3_ORYBR; Uncharacterized protein
STRINGOB04G32080.11e-179(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP185037100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23260.31e-42MIKC_MADS family protein
Publications ? help Back to Top
  1. Schilling S, et al.
    Non-canonical structure, function and phylogeny of the Bsister MADS-box gene OsMADS30 of rice (Oryza sativa).
    Plant J., 2015. 84(6): p. 1059-72
    [PMID:26473514]