PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB04G32400.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 521aa    MW: 59592.1 Da    PI: 9.6007
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB04G32400.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH421.6e-133644031155
                   HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
           HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   rRRdriN+++  L+ellP++     +K +K+++L +A++Y+ksLq
  OB04G32400.1 364 RRRDRINEKLKALQELLPNC-----TKTDKVSMLDEAIDYLKSLQ 403
                   9*******************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF044346.8E-6169207IPR007527Zinc finger, SWIM-type
PROSITE profilePS5096610.249176208IPR007527Zinc finger, SWIM-type
SMARTSM005751.7E-6183210IPR006564Zinc finger, PMZ-type
PROSITE profilePS5088814.342353402IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-14360408IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.9E-11364403IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.4E-14364411IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.48E-13364407No hitNo description
SuperFamilySSF474596.41E-16364429IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 521 aa     Download sequence    Send to blast
MNAIPIVFPN SEHRYCKRHL LQNMANKGWR SEMYKGFVDA AVYATTEWEY EKAMEDLKKL  60
NLKAWEWLTV IGQEHFSRHA FSPKAKSDLV VNNLSEVFNK YILEARDKPI VTMAECIRRK  120
VMVKLALKRE GRAAVQWEIT PIVAQKLEME KNHARYCWCY QSNLTTWEVH CSDRSYAVDI  180
TARTCACHKW QLTGIPCKHA VCALYKAGHT PEDYVDDYFR KDAYMRTYTG VIYPVPDEHG  240
WTKTNSPDID PPKFEKHIGK PKKNRRRGPD EGPRVQGPAR KTTVTCSNCR RNGHTYRTCG  300
QPLKPDLQLR AATIKARKRG AASSSPQNSN EAPSIGMNGG ARAVTGEGGD RVVDELRLHG  360
VMARRRDRIN EKLKALQELL PNCTKTDKVS MLDEAIDYLK SLQLQLQMLV MGKGMAPVVP  420
PELQQYMHYI TADPAQIPPL RPSEPRPFQI THSTPQRQSN VESDFLSQMQ NLHPSEPPQN  480
FLRPPKLQLY TPEQQRRGLA SSSGHNSGWI TERNSSYNFM E
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB04G32400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025876177.11e-146uncharacterized protein LOC4346569
TrEMBLJ3M1G50.0J3M1G5_ORYBR; Uncharacterized protein
STRINGOB04G32400.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP95623043
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.12e-20phytochrome interacting factor 3-like 5