PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB04G33270.1
Common NameLOC102718077
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 437aa    MW: 45708.1 Da    PI: 7.5503
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB04G33270.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH15.14.3e-053293661254
                   HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
           HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                   R +++ +++  L++l+ +      +K + a++L +++eYIk L
  OB04G33270.1 329 RKEKLGDRITALQQLVSPF-----GKTDTASVLHETIEYIKFL 366
                   677888999*******998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.935317366IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.1E-8327375IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.8E-11327380IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.64E-5327370No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 437 aa     Download sequence    Send to blast
MGDRSQMMHA AAPAAMYNGG GGGAGGSSHG VWWNNAVPAA TCSTTELAGY TAWSSALASG  60
YVDVMAGDNG GKAKSTTTAS SESPGNNSSI TFQEPTSIPD PTAVAAVPQP AMAGFTDWTQ  120
PFMNNATALH EFLHDGHHDM SASSLMNPSS NNLALQQPGH HEQDHHQLLS SFGSDLLLSP  180
TSPYGFQSSL LRSLMEPAAA AAAKQPALAG LQQYQYQQQM GQAPVAAKLA QAVGARDSLQ  240
FTNDAPFWNP SAGFGMAATA AAAAPDQASA RSVKRSSPAP PRAATHALKT ALEGVGDSSS  300
VITKKGNGEP SFKKPRLETP SPLPTFKVRK EKLGDRITAL QQLVSPFGKT DTASVLHETI  360
EYIKFLHDQV GALSAPYLKN GAHQVPHLKN SSPDKSKHGE VSLKGRGLCL VPISSTFAVA  420
SEVPVELWTP FGANFIR
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB04G33270.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8327010.0CT832701.2 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI224H06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006652870.10.0PREDICTED: transcription factor bHLH112-like
TrEMBLJ3M1Q20.0J3M1Q2_ORYBR; Uncharacterized protein
STRINGOB04G33270.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22163787
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61660.38e-50bHLH family protein