PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB04G34460.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WOX
Protein Properties Length: 228aa    MW: 25304 Da    PI: 9.9135
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB04G34460.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.81e-1986145357
                   --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
      Homeobox   3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                   +R+++++eq+++Le l++   r+p+  ++e+++++l    +++ ++V++WFqN++a+e++
  OB04G34460.1  86 TRWNPSPEQIKVLEMLYRGgMRTPNSVQIERITEELgkygRIEGKNVFYWFQNHKARERQ 145
                   8*****************99**************************************97 PP
2Wus_type_Homeobox117.27.8e-3885147365
  Wus_type_Homeobox   3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        +tRW+P+peQik+Le+ly+ G+rtPn+ +i+rit+eL +yG+ie+kNVfyWFQN+kaRerqkq
       OB04G34460.1  85 TTRWNPSPEQIKVLEMLYRGGMRTPNSVQIERITEELGKYGRIEGKNVFYWFQNHKARERQKQ 147
                        79***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007110.00981146IPR001356Homeobox domain
SMARTSM003896.2E-783150IPR001356Homeobox domain
SuperFamilySSF466899.41E-1384151IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.2E-886145IPR009057Homeodomain-like
PfamPF000462.2E-1786145IPR001356Homeobox domain
CDDcd000864.31E-586147No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0007165Biological Processsignal transduction
GO:0010067Biological Processprocambium histogenesis
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MRLHHLHVAY QLDKASSSSC PAPSISPSIP GSAFPAFALK CLRPLAPKIS LPEPRKTIAP  60
PDFVPRARNV SKLLNYAVQV PTAGTTRWNP SPEQIKVLEM LYRGGMRTPN SVQIERITEE  120
LGKYGRIEGK NVFYWFQNHK ARERQKQKRA ALLTLSTLDS SSLPSNQTKV DMPDEKKKKE  180
LHDDGLTSCK RRCKAWGDGA GDGDAATEDA TDDDVTLELF PLRPLGKA
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB04G34460.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF8361591e-176JF836159.1 Oryza sativa Japonica Group WUSCHEL-like homeobox protein (WOX4) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006652920.11e-146PREDICTED: WUSCHEL-related homeobox 4-like
SwissprotQ25AM21e-117WOX4_ORYSI; WUSCHEL-related homeobox 4
SwissprotQ7XTV31e-117WOX4_ORYSJ; WUSCHEL-related homeobox 4
TrEMBLJ3M2211e-169J3M221_ORYBR; Uncharacterized protein
STRINGOB04G34460.11e-169(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP126923035
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46480.11e-35WUSCHEL related homeobox 4